PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021527
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 1055aa    MW: 118287 Da    PI: 6.6794
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021527genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.42.3e-10138183554
                   AP2   5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 
                           GVr+ k +gr+ A I d    + ++k+++lg+f+t eeA +a+   + ++e
  PGSC0003DMP400021527 138 GVRRQK-NGRYGAVITD----KiRHKQVWLGTFDTVEEASQAYLSKKSEFE 183
                           9**888.8*********....4345******************88777665 PP
2AP230.21.1e-09282326553
                   AP2   5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                           GVr  k +gr+ A I d    + ++k+++lg+f+t eeA +a+   + ++
  PGSC0003DMP400021527 282 GVRKQK-TGRYGAVITD----QiRHKQVWLGTFDTIEEASQAYFSKKSEF 326
                           9**888.9*********....4345*****************98776665 PP
3AP233.61e-10435482556
                   AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           GVr+ k +gr+ A I d +   k+k+++lg+f+t eeA +a+   + +le+e
  PGSC0003DMP400021527 435 GVRRQK-NGRYGAVITDTT---KHKQVWLGTFDTVEEASQAYFSKKSELENE 482
                           9**888.8*********42...35******************9999999886 PP
4AP230.49.4e-10591638556
                   AP2   5 GVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                           GVr+ k +gr+ A I d       r k+++lg+f+t +eA +a+   + +le+e
  PGSC0003DMP400021527 591 GVRRQK-NGRYGAVITDtT-----RhKKVWLGTFDTVDEASQAYFSKKSELENE 638
                           9**888.8*********33.....35******************9999999886 PP
5AP231.15.8e-10742786553
                   AP2   5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                           G+r+ k +gr+ A I d      k+kr++lg+f+t eeA +a+   + +l
  PGSC0003DMP400021527 742 GIRRQK-KGRYGAVITD----RiKHKRVWLGTFDTVEEASQAYLSKKSEL 786
                           999888.7*********....4446******************8776665 PP
6AP234.26.5e-11848892653
                   AP2   6 VrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                           V+ +k +g++ +eIr p    ++ kr++lg+fgtaeeA +a+   ++++
  PGSC0003DMP400021527 848 VHKRKDSGKYTSEIRNP----ISkKRIWLGTFGTAEEASQAYQSKKLEF 892
                           8899************7....246******************8777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.154135195IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-9137182IPR016177DNA-binding domain
PfamPF008474.0E-6137183IPR001471AP2/ERF domain
SMARTSM003809.3E-5138201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-10138176IPR001471AP2/ERF domain
CDDcd000183.07E-12138175No hitNo description
SMARTSM003803.0E-4279347IPR001471AP2/ERF domain
PROSITE profilePS5103211.575279336IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-9281326IPR016177DNA-binding domain
PfamPF008474.7E-5282328IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-9282320IPR001471AP2/ERF domain
CDDcd000181.87E-10282319No hitNo description
SMARTSM003802.4E-5432500IPR001471AP2/ERF domain
PROSITE profilePS5103211.838432494IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-9434479IPR016177DNA-binding domain
CDDcd000182.33E-12435472No hitNo description
PfamPF008474.6E-6435482IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-10435476IPR001471AP2/ERF domain
PROSITE profilePS5103211.469588647IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-9590635IPR016177DNA-binding domain
PfamPF008471.0E-5590638IPR001471AP2/ERF domain
SMARTSM003806.8E-4591645IPR001471AP2/ERF domain
CDDcd000181.12E-10591628No hitNo description
Gene3DG3DSA:3.30.730.109.5E-10591632IPR001471AP2/ERF domain
PROSITE profilePS5103211.667739796IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-9741785IPR016177DNA-binding domain
PfamPF008479.2E-6741786IPR001471AP2/ERF domain
CDDcd000186.73E-12742779No hitNo description
SMARTSM003805.3E-4742798IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-10742779IPR001471AP2/ERF domain
PROSITE profilePS5103213.841844906IPR001471AP2/ERF domain
SMARTSM003808.1E-5845899IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-9848892IPR016177DNA-binding domain
PfamPF008472.4E-4848893IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-13848892IPR001471AP2/ERF domain
CDDcd000182.22E-11848885No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1055 aa     Download sequence    Send to blast
MSMETDEEGL LADEKEEEES SSKKQKITQI EQSEIFVDKV KSTIPLQHTN HKAQSTADRS  60
KQETDGKMPL FVNEWQMGEK GAFLGTEEFK GFSSNMHKFQ EKEPFICMES CSKETPCLLS  120
NVHGGIESSN KAKINLIGVR RQKNGRYGAV ITDKIRHKQV WLGTFDTVEE ASQAYLSKKS  180
EFEKFKQQGN KDNKPKENLD QIQQTSLFVG NDQTLDTASV SRINPHETIH VVEVQNKNWL  240
GKEPESAKET TCLMVNVHGI ESYDECNTTT SCNPKVKRSL LGVRKQKTGR YGAVITDQIR  300
HKQVWLGTFD TIEEASQAYF SKKSEFEKLK QQGNKDTENC DQIQQPESPV VLSSSSVAND  360
QTLDTASVGC RNRRIDSHET APHIVEVHKN KMSGEVPESS KETQRLMASV VDNTESSDEC  420
NTSTSNLKAK ISLLGVRRQK NGRYGAVITD TTKHKQVWLG TFDTVEEASQ AYFSKKSELE  480
NEKLRQQRNK ENRPKKNCDQ IQQPESPVVQ ASLSVADVQT LGTASVGMRN ERTVFHGTAH  540
VVGVHKSKTS EKEPEFTKET SCLMDSVHAT ESSDQCNTST SNSTAKISLI GVRRQKNGRY  600
GAVITDTTRH KKVWLGTFDT VDEASQAYFS KKSELENEKL NQQGNNETRD QIQQPESLVA  660
SLSMDNDQTL NAASGGRRNK RIDSHKATPD IVGVHKNKTS GKEFESSRET ARLMDNVHGT  720
ESCDECNTTT SCDPKAKISL IGIRRQKKGR YGAVITDRIK HKRVWLGTFD TVEEASQAYL  780
SKKSELKRLG QQGDEENKLK DCAQVQQPES PVVPSLSVAN HDQTLNTARM RRNERIDSHK  840
TITRFFRVHK RKDSGKYTSE IRNPISKKRI WLGTFGTAEE ASQAYQSKKL EFERLVHAQQ  900
QCGNEQTHST QDEKSEKLVN VESGHENVNR ELESAGGSEI NVTISNSSNG GTEERIDSHE  960
IGTAEEAFHA YQSKKFDMPT DSSAGEKQEG QEDDEDLEMG EWVQLPGNRA VKFSLKLGLP  1020
IIDNYGSLLG EFSTLDDLSI CKTDYDNETY MCLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021527
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566296.10.0PREDICTED: uncharacterized protein LOC107864446
TrEMBLM1AW610.0M1AW61_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000317510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.25e-12ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]