PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021524
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 652aa    MW: 72898.4 Da    PI: 8.4971
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021524genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-103783555
                   AP2  5 GVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          G+r+ k +gr++A I d       r k+++lg+f+t eeA +a+   + ++e+
  PGSC0003DMP400021524 37 GIRRQK-NGRYAAVITDrI-----RhKKVWLGTFDTVEEASQAYFSKKSEFEN 83
                          999887.8*********32.....35******************988888776 PP
2AP227.67.5e-09218260853
                   AP2   8 wdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                           ++ k+gr+ A I d +     + kr++lg+f+t eeA +a+   + ++
  PGSC0003DMP400021524 218 RRQKNGRYTAVITDpF-----ThKRVRLGTFDTVEEASQAYFSKKSEF 260
                           56779*********55.....46******************8776665 PP
3AP224.95.2e-08349395454
                   AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                           +G+r++k +gr++A I dp     + k + lg+f++ eeA  a+   + ++e
  PGSC0003DMP400021524 349 TGIRRRK-SGRYAAVITDPI----KhKEVCLGTFDSIEEASHAYLSKKSEFE 395
                           69**999.7*********72....46******************88776665 PP
4AP227.48.5e-09452493751
                   AP2   7 rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 
                           ++ k+ gr+++eI  p     + k+++lg+f++aeeA  a+   ++
  PGSC0003DMP400021524 452 YRSKTAGRYRSEITNPI----TkKKIWLGTFDSAEEASHAYQSKKL 493
                           8899********99972....36*****************976665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.7723493IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-93681IPR016177DNA-binding domain
PfamPF008478.6E-73684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-103775IPR001471AP2/ERF domain
CDDcd000182.08E-113774No hitNo description
SMARTSM003809.7E-43788IPR001471AP2/ERF domain
PROSITE profilePS5103211.561213273IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-9215260IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-8216254IPR001471AP2/ERF domain
CDDcd000182.50E-10216253No hitNo description
SMARTSM003800.0055216279IPR001471AP2/ERF domain
PROSITE profilePS5103211.43347407IPR001471AP2/ERF domain
SMARTSM003800.001347413IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-9349387IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-9349392IPR016177DNA-binding domain
PROSITE profilePS5103212.918447510IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-9448496IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-11453496IPR001471AP2/ERF domain
SMARTSM003800.0013453502IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MDSKKLVVNV KQGEKLEYDE CNTSKNCNPK DKISLIGIRR QKNGRYAAVI TDRIRHKKVW  60
LGTFDTVEEA SQAYFSKKSE FENEKLSNQG NKKSKRKRET RSIVEVYKRG KYNSEKSEEL  120
VNVKQGNENV NCEVFQIESA GESEIDVVMS NSFNGGTEQR IDSHEIGTVE EAFRIAKEGS  180
KVFILGLMAN VCGIKSFDDC SNTTSCNPKV KVSLIGTRRQ KNGRYTAVIT DPFTHKRVRL  240
GTFDTVEEAS QAYFSKKSEF EKLSQQGNKQ NIPKKNCDQI QQLESSSVVA SLDTAASESG  300
IAKRIDSQGE EPKSSKATSC VKANAHSAES SDECSITTSC DHKPRISLTG IRRRKSGRYA  360
AVITDPIKHK EVCLGTFDSI EEASHAYLSK KSEFEKLRQQ GDKKNKPKKN CDQIQQPESQ  420
SVVASLDTTT RDSGSAKRID SHKTTTHLIG AYRSKTAGRY RSEITNPITK KKIWLGTFDS  480
AEEASHAYQS KKLEFQKLVE AKQQQCTNKQ RKSEKLVSVR QGHENVNCEP FHLESASGSP  540
DIDVLFSNSS NEGTVRSIDS YQSNKFDLLS SKEVELQSNM LTESSAGKKQ EGQEDDKDLW  600
KGEWMQLPGD NRAVMFSLKL GLPIIDNYGY LLGEFSTLDD LSISVTEDDN H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021524
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027775191.10.0uncharacterized protein LOC114078472
TrEMBLM1AW580.0M1AW58_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000317440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-11ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]