PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021523
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 465aa    MW: 51596.5 Da    PI: 8.2026
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021523genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.24.8e-093173853
                   AP2  8 wdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53
                          ++ k+gr+ A I d +     + kr++lg+f+t eeA +a+   + ++
  PGSC0003DMP400021523 31 RRQKNGRYTAVITDpF-----ThKRVRLGTFDTVEEASQAYFSKKSEF 73
                          56779*********55.....46******************8776665 PP
2AP225.53.3e-08162208454
                   AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                           +G+r++k +gr++A I dp     + k + lg+f++ eeA  a+   + ++e
  PGSC0003DMP400021523 162 TGIRRRK-SGRYAAVITDPI----KhKEVCLGTFDSIEEASHAYLSKKSEFE 208
                           69**999.7*********72....46******************88776665 PP
3AP2285.5e-09265306751
                   AP2   7 rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 
                           ++ k+ gr+++eI  p     + k+++lg+f++aeeA  a+   ++
  PGSC0003DMP400021523 265 YRSKTAGRYRSEITNPI----TkKKIWLGTFDSAEEASHAYQSKKL 306
                           8899********99972....36*****************976665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.5612686IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-92873IPR016177DNA-binding domain
CDDcd000181.38E-102966No hitNo description
SMARTSM003800.00552992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-82967IPR001471AP2/ERF domain
PROSITE profilePS5103211.43160220IPR001471AP2/ERF domain
SMARTSM003800.001160226IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-9162205IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.8E-10162200IPR001471AP2/ERF domain
PROSITE profilePS5103212.918260323IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-10261309IPR016177DNA-binding domain
SMARTSM003800.0013266315IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-11266309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MANVCGIKSF DDCSNTTSCN PKVKVSLIGT RRQKNGRYTA VITDPFTHKR VRLGTFDTVE  60
EASQAYFSKK SEFEKLSQQG NKQNIPKKNC DQIQQLESSS VVASLDTAAS ESGIAKRIDS  120
QGEEPKSSKA TSCVKANAHS AESSDECSIT TSCDHKPRIS LTGIRRRKSG RYAAVITDPI  180
KHKEVCLGTF DSIEEASHAY LSKKSEFEKL RQQGDKKNKP KKNCDQIQQP ESQSVVASLD  240
TTTRDSGSAK RIDSHKTTTH LIGAYRSKTA GRYRSEITNP ITKKKIWLGT FDSAEEASHA  300
YQSKKLEFQK LVEAKQQQCT NKQRKSEKLV SVRQGHENVN CEPFHLESAS GSPDIDVLFS  360
NSSNEGTVRS IDSYQSNKFD LLSSKEVELQ SNMLTESSAG KKQEGQEDDK DLWKGEWMQL  420
PGDNRAVMFS LKLGLPIIDN YGYLLGEFST LDDLSISVTE DDNH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021523
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027775191.10.0uncharacterized protein LOC114078472
TrEMBLM1AW580.0M1AW58_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000317440.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.28e-12ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]