PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021207
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 482aa    MW: 54100.9 Da    PI: 6.8696
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021207genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like772.4e-2499152155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           k+r++Wt +LH++Fv+av+++ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  PGSC0003DMP400021207  99 KARVVWTVDLHQKFVKAVNHI-GFDKVGPKKILDLMGVPWLTRENVASHLQKYRL 152
                           68*******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23006.6E-10153No hitNo description
PROSITE profilePS5011013.779139IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.71E-5247IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.602.2E-2797157IPR009057Homeodomain-like
SuperFamilySSF466892.15E-1797156IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-2299152IPR006447Myb domain, plants
PfamPF002496.8E-8101151IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MSVDGETSRV MKGVQHRACD YLLKPIRMKE LRNIWQHVLR KKMQEARDAG NHELDQYDEV  60
WMLNGAEILS GKKRKDFENK HDEIEMSDSR FVDSSSMKKA RVVWTVDLHQ KFVKAVNHIG  120
FDKVGPKKIL DLMGVPWLTR ENVASHLQKY RLYLTRLQKE DEAKDSFGGM KHPDVSSQEI  180
CSSLSLQNPV DVYTDVTNDK YVCVSGDKAI VQNGKSNIYE SKVKGVVSVP AAEAKSVIED  240
NFDSQTAGSK IGLKDSFGLV NTDVKSSKVP TPYCSTGEAP QPQYKQQDFK PHFQSANGLS  300
HQPLPVVSHQ IPVDRTQVTC FVNHIPSHEE RDRHPDTRNK PSFFKTKNGV GKFSPVESNV  360
NLFQPVSHQQ TNFHTLEQMP STTWRATSHN VVNGSQSSLG NLTLRSGSIV ASVGEEIFGA  420
SVQGECFLAN NGLPNIEQFD YNDPQPISGV PTYLYDTLRF DYEYPIDSLE GNMMDQGLFI  480
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-1895157163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021207
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341767.10.0PREDICTED: two-component response regulator ARR11 isoform X1
RefseqXP_006341768.10.0PREDICTED: two-component response regulator ARR11 isoform X2
TrEMBLM1AVF10.0M1AVF1_SOLTU; Two-component response regulator
STRINGPGSC0003DMT4000312600.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.14e-64response regulator 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]