PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021198
Common NameLOC102584344
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 218aa    MW: 25465 Da    PI: 6.8698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021198genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-131461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT eEd +l + +   G  +W+++++  g+ R++k+c++rw +yl
  PGSC0003DMP400021198 14 RGPWTIEEDHRLMNFILNNGIQCWRLVPKLAGLMRCGKSCRLRWINYL 61
                          89********************************************97 PP
2Myb_DNA-binding53.17.6e-1767110146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ T+ E++ +++++ qlG++ W++Ia +++ gRt++++k++w++
  PGSC0003DMP400021198  67 RGALTEAEEDMIIKLHSQLGNR-WSKIAGHFP-GRTDNEIKNHWNT 110
                           7889******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-20564IPR009057Homeodomain-like
PROSITE profilePS5129415.125961IPR017930Myb domain
SuperFamilySSF466891.91E-2811108IPR009057Homeodomain-like
SMARTSM007176.7E-51363IPR001005SANT/Myb domain
PfamPF002491.4E-111461IPR001005SANT/Myb domain
CDDcd001674.70E-41661No hitNo description
PROSITE profilePS5129427.02762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2565117IPR009057Homeodomain-like
SMARTSM007174.7E-1566114IPR001005SANT/Myb domain
PfamPF002491.3E-1467110IPR001005SANT/Myb domain
CDDcd001671.69E-1071110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGRQPCCDKI GLKRGPWTIE EDHRLMNFIL NNGIQCWRLV PKLAGLMRCG KSCRLRWINY  60
LRPDLKRGAL TEAEEDMIIK LHSQLGNRWS KIAGHFPGRT DNEIKNHWNT RIKKKLKFLG  120
IDPLTHKPIE EINNDDIKQQ VSEEINEKVM PEKTLEYTQE QQNSTSSSSI NESNLEMFQN  180
SHTLDMYYPG VEDPFQNWIA SPIHNWDLFD NLQDNFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021198
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341811.11e-162PREDICTED: protein ODORANT1
SwissprotQ9C7U73e-75MYB20_ARATH; Transcription factor MYB20
TrEMBLM1AVE31e-161M1AVE3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000312501e-162(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-85myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]