PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020940
Common NameLOC102579068
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 853aa    MW: 93163.2 Da    PI: 5.8616
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020940genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-182381357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+e+Le++++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  PGSC0003DMP400020940 23 KYVRYTPEQVEALERVYAECPKPTSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81
                          5679*****************************************************97 PP
2START169.72e-531713782204
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++   +l vi +g  
  PGSC0003DMP400020940 171 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNVLSVIPTGng 258
                           68999*****************************************************.8888888888******************** PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                           g+++l++ +++a+++l+  Rdf+++Ry+ +l++g++vi+++S++  +  p+     s+vRae+lpSg+li+p+++g+s +++v+h+dl+
  PGSC0003DMP400020940 259 GTIELIYLQTYAPTTLATaRDFWTLRYTTSLEDGSLVICERSLTTATGGPTgppATSFVRAEMLPSGYLIRPCEGGGSMIHIVDHIDLD 347
                           **********************************************999998999********************************** PP

                           SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                 START 174 grlphwllrslvksglaegaktwvatlqrqc 204
                           +++++++lr+l++s+ + ++k+++a+l++ +
  PGSC0003DMP400020940 348 AWSVPEVLRPLYESSKILAQKMTMAALRHIR 378
                           ***************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-19981IPR009057Homeodomain-like
PROSITE profilePS5007115.5641882IPR001356Homeobox domain
SMARTSM003891.4E-152086IPR001356Homeobox domain
SuperFamilySSF466891.15E-162285IPR009057Homeodomain-like
CDDcd000861.42E-162383No hitNo description
PfamPF000466.1E-162481IPR001356Homeobox domain
CDDcd146862.40E-675114No hitNo description
PROSITE profilePS5084826.515161389IPR002913START domain
CDDcd088754.23E-71165381No hitNo description
SMARTSM002344.4E-51170380IPR002913START domain
Gene3DG3DSA:3.30.530.203.0E-23170375IPR023393START-like domain
SuperFamilySSF559617.0E-38171382No hitNo description
PfamPF018525.9E-51171378IPR002913START domain
PfamPF086701.3E-47707851IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MALCLQRGGG GESGSKNDMD NGKYVRYTPE QVEALERVYA ECPKPTSLRR QQLIRECPIL  60
SNIEPKQIKV WFQNRRCREK QRKEASRLQT VNRKLSAMNK LLMEENDRLQ KQVSQLVYEN  120
GYMKQQINTV SSTTTDTSCE SVVVSGQQQR KNPTPQHPER DANNPAGLLA IAEETLAEFL  180
GKATGTAVDW VQMIGMKPGP DSIGIVAVSR NCSGVAARAC GLVSLEPTKV AEILKDRPSW  240
YRDCRCLNVL SVIPTGNGGT IELIYLQTYA PTTLATARDF WTLRYTTSLE DGSLVICERS  300
LTTATGGPTG PPATSFVRAE MLPSGYLIRP CEGGGSMIHI VDHIDLDAWS VPEVLRPLYE  360
SSKILAQKMT MAALRHIRQI AQETSGEIQY TGGRQPAVLR ALSQRLCRGF NDAVSGFVDD  420
GWTIMDSDGV EDVTIAINSS SSKFLGSQYN TLSILPTFGG VLCARASMLL QNVPPALLVR  480
FLREHRSEWA DYGVDAYSSA SLKASPYAVP CARPGGFPSS QVILPLAQTV EHEEFLEVVR  540
LEGPAFSPED IALSRDMYLL QLCSGVDENA AGACAQLVFA PIDESFGDDA PLIPSGFRVI  600
PLEPKSDVPA ATRTLDLAST LEAGTGGSGT RPAGEIEAGN YNHRSVLTIA FQFTFESHYQ  660
DNVAAMARQY VRSIVGSVQR VAMAIAPSRL SSQLTPKSFP GSPEAVTLAR WISRSYRVHT  720
GGDLFQVDSQ AGDAVLKQLW HHSDAIMCCS VKMNASAVFT FANQAGLDML ETTLLALQDI  780
MLDKILDEAG RKVLLSEFSK IMQQGFAYLP AGICVSSMGR PISYEQAIAW KVLNDDDSNH  840
CLAFMFINWS FV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5603200.0AY560320.1 Nicotiana sylvestris PHAVOLUTA-like HD-ZIPIII protein mRNA, complete cds.
GenBankJQ6869320.0JQ686932.1 Nicotiana tabacum cultivar SR1 PHV HD-ZIPIII (PHV) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363649.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
TrEMBLM1AUU80.0M1AUU8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000308290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]