PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020815
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 412aa    MW: 45617 Da    PI: 4.9116
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020815genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.76.4e-112504083374
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                            lLl+cAe+v+ ++l +a +lL ++ el+sp g++ +R+aayf+e L+ar+ +s  + y+ l+ ++ + ++s++ ++al+ ++ +sP++
  PGSC0003DMP400020815  50 GLLLQCAEFVAMENLDEAANLLPEIAELSSPFGSSAERVAAYFAESLSARIISSHLRFYSPLNLKSLTLTHSQKLFTALQSYNTISPLI 138
                           58*************************************************************************************** PP

                  GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                           kfsh taNqaI++a+ege++vH+iD+di+qGlQWp L+q L+sR+++  s++iTgvgs    s e le+tg+rL++fA+++g+pfef++
  PGSC0003DMP400020815 139 KFSHYTANQAIYQALEGEDHVHVIDLDIMQGLQWPGLFQILSSRSRKLRSIKITGVGS----SMELLESTGRRLTEFANSFGLPFEFQP 223
                           **********************************************************....*************************** PP

                  GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                           +  k  +  +l++L vk gE+++Vn+++  h l+d ++s       + +l+  l+Pk++++veq+++h +++Fl rf+eal+yysalfd
  PGSC0003DMP400020815 224 FEGKIGHITDLNQLGVKIGETTVVNWMH--HCLYDITGSDLG----TFRLLTLLRPKLITLVEQDLSH-GGNFLGRFVEALHYYSALFD 305
                           988888999******************9..777766777777....99********************.789***************** PP

                  GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                           +l  +l++es er++vE++l++ ei+n+va  g +r+ +   +e+W   +++ GF pv+ls + a+qa+lll +++ +gy++ +e+g+l
  PGSC0003DMP400020815 306 ALGDGLSEESVERHTVEQQLFSSEIRNIVAVGGPKRTGEVP-VERWGVEMKRIGFLPVSLSGTPAAQASLLLGMFP-RGYTLVDENGCL 392
                           ***********************************887765.9*********************************.************ PP

                  GRAS 359 vlgWkdrpLvsvSaWr 374
                            lgWkd +L+++SaW+
  PGSC0003DMP400020815 393 KLGWKDLSLLTASAWQ 408
                           ***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.19122389IPR005202Transcription factor GRAS
PfamPF035142.2E-10950408IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSSKRSIVEF TPVSDEPQLL TKRPRNEEEE EEGEELVLVD ADSIGLRLLG LLLQCAEFVA  60
MENLDEAANL LPEIAELSSP FGSSAERVAA YFAESLSARI ISSHLRFYSP LNLKSLTLTH  120
SQKLFTALQS YNTISPLIKF SHYTANQAIY QALEGEDHVH VIDLDIMQGL QWPGLFQILS  180
SRSRKLRSIK ITGVGSSMEL LESTGRRLTE FANSFGLPFE FQPFEGKIGH ITDLNQLGVK  240
IGETTVVNWM HHCLYDITGS DLGTFRLLTL LRPKLITLVE QDLSHGGNFL GRFVEALHYY  300
SALFDALGDG LSEESVERHT VEQQLFSSEI RNIVAVGGPK RTGEVPVERW GVEMKRIGFL  360
PVSLSGTPAA QASLLLGMFP RGYTLVDENG CLKLGWKDLS LLTASAWQPC D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-156244092380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020815
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357876.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ11e-171SCL23_ARATH; Scarecrow-like protein 23
TrEMBLM1AUK90.0M1AUK9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000306520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-150GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]