PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400020261

Common Name

LOC102578723

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 403aa MW: 45204.9 Da PI: 6.5111

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400020261	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7.5e-32	225	279	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH+rFve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR PGSC0003DMP400020261 225 KARIRWTQDLHDRFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRN 279 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.434	222	282	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-28	223	280	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-16	223	279	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-24	225	280	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-8	229	278	IPR001005	SANT/Myb domain
Pfam	PF14379	4.1E-20	309	356	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MSIQNYELAS DCNLEFPQMG FCFQPENSAE NGCQQQQQQN FWPSTDSSSS RTIISRIGSS 60 PSAFFATERY LGLTQYENQD NNNSCSQLSK NLGPQTTSFT QQCGNGFLAD SSARVDTDFP 120 KISMPSFIRS QFSSSQPFGP EGLYGNPFSN LSEKERILLL KSKLFREIDS SNRQPASIPF 180 QGNQDYGVSN NTCGFNLVHI RQQSGSQSAN SFNNSGCSGG SLSSKARIRW TQDLHDRFVE 240 CVNRLGGADK ATPKAILKLM DSEGLTIFHV KSHLQKYRNA KFIPESTEGR SGKTDSPNNV 300 SQIDSKTGMQ IKEALHMQLE VQRRLHEQLE IQRKLQLRIE EQGEQLKKIF EQQQQTTRSL 360 LETRNSSISS PADQFTPHED EVFAAESFNN THFQSNISYN DM*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MSIQNYELAS DCNLEFPQMG FCFQPENSAE NGCQQQQQQN FWPSTDSSSS RTIISRIGSS  60
PSAFFATERY LGLTQYENQD NNNSCSQLSK NLGPQTTSFT QQCGNGFLAD SSARVDTDFP  120
KISMPSFIRS QFSSSQPFGP EGLYGNPFSN LSEKERILLL KSKLFREIDS SNRQPASIPF  180
QGNQDYGVSN NTCGFNLVHI RQQSGSQSAN SFNNSGCSGG SLSSKARIRW TQDLHDRFVE  240
CVNRLGGADK ATPKAILKLM DSEGLTIFHV KSHLQKYRNA KFIPESTEGR SGKTDSPNNV  300
SQIDSKTGMQ IKEALHMQLE VQRRLHEQLE IQRKLQLRIE EQGEQLKKIF EQQQQTTRSL  360
LETRNSSISS PADQFTPHED EVFAAESFNN THFQSNISYN DM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-23	225	282	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-23	225	282	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-23	225	282	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-23	225	282	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-23	225	282	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400020261

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362232.1	0.0	PREDICTED: uncharacterized protein LOC102578723
TrEMBL	M1ATC9	0.0	M1ATC9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400029758	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2491	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	4e-70	G2-like family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400020261
Entrez Gene	102578723

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]