PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020254
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SBP
Protein Properties Length: 264aa    MW: 28796.2 Da    PI: 7.4529
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020254genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP49.41.2e-1512414776
                          SSEEETTT--SS--S-STTTT-------S- CS
                   SBP 47 srfhelsefDeekrsCrrrLakhnerrrkk 76
                          srfh+l+efD++krsCrrrLa hnerrrk+
  PGSC0003DMP400020254 12 SRFHQLTEFDQGKRSCRRRLACHNERRRKP 41
                          9***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114113.699141IPR004333Transcription factor, SBP-box
PfamPF031103.0E-81240IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-121245IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.105.2E-51228IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MNHDNSCSVL GSRFHQLTEF DQGKRSCRRR LACHNERRRK PPSGSLFSTH YGNLSSSIFE  60
NNSSRSGSFL VDFSSHQNVN DSSWPNTRAS EQGWDHQSSG KFLQRPWLNN SENAASELVL  120
QGSATRTSYP SVPSGDYFPG VSDSSGALSL LSNRSWGSRN RSPSLGVNSQ VHIDGVHTIQ  180
PSGSHGAPTN HFSSPSLSFK GNEASSSSHE MPPDLGLGQM LQASDNPYCG ELGMAQHGDG  240
RQYMELDQSK GYHPSVQNVH WTL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020254
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2445800.0AC244580.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-40g6 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362236.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLM1ATC20.0M1ATC2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000297510.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.16e-20squamosa promoter binding protein-like 15
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]