PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400020222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 231aa MW: 23758.8 Da PI: 9.183 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.9 | 9.6e-10 | 27 | 52 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd+C+FaHg+ PGSC0003DMP400020222 27 KTKLCNKFNTAEGCKFGDTCNFAHGE 52 8***********************96 PP | |||||||
2 | zf-CCCH | 38.9 | 1.4e-12 | 197 | 221 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +fa+ G C +GdrC+FaHg PGSC0003DMP400020222 197 YKTKLCENFAK-GSCTFGDRCHFAHG 221 9**********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-12 | 23 | 53 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-7 | 24 | 54 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.002 | 25 | 52 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.601 | 25 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-7 | 27 | 52 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.9E-15 | 91 | 167 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 3.1E-12 | 95 | 165 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 1.8E-16 | 95 | 165 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.487 | 96 | 160 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.55E-14 | 98 | 160 | No hit | No description |
Pfam | PF00013 | 4.6E-12 | 98 | 162 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-16 | 194 | 227 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-9 | 194 | 226 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-7 | 196 | 222 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.319 | 196 | 223 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-10 | 197 | 221 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MNLGSAPPAS RNVAAPPMSN GNAPAVKTKL CNKFNTAEGC KFGDTCNFAH GEWQIGKPIM 60 PSQEDPRAMG VGPAPSRFGG RTEPPVSGPA ASFGTTATAK ISVDSSLAGA IIGKGGVNSK 120 QICRQTGAKL AIREHETDIN LRNIELEGTF EQISQASAMV RELINSLGPV GGPGRAPSGH 180 GRGPAGPGGP APPMSNYKTK LCENFAKGSC TFGDRCHFAH GNDEMRKTGT * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400020222 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244580 | 0.0 | AC244580.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-40g6 map 10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362228.1 | 1e-167 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Refseq | XP_006362229.1 | 1e-167 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-75 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | M1AT96 | 1e-167 | M1AT96_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400029683 | 1e-166 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-61 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400020222 |
Publications ? help Back to Top | |||
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