PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020221
Common NameLOC102605825
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 302aa    MW: 31381.5 Da    PI: 9.6278
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020221genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-073660226
                          -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                          kt++C  f+ t  C++G++C+F H 
  PGSC0003DMP400020221 36 KTKPCTKFFSTAGCPFGESCHFLHH 60
                          9***********************6 PP
2zf-CCCH29.41.4e-0998123227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           kt+lC+ f     Ck+Gd+C+FaHg+
  PGSC0003DMP400020221  98 KTKLCNKFNTAEGCKFGDTCNFAHGE 123
                           8***********************96 PP
3zf-CCCH38.42e-12268292126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ykt+lC +fa+ G C +GdrC+FaHg
  PGSC0003DMP400020221 268 YKTKLCENFAK-GSCTFGDRCHFAHG 292
                           9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0693461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4323462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-63561IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-63660IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-83660IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-1294124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-795125IPR000571Zinc finger, CCCH-type
SMARTSM003560.00296123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.60196124IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-798123IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.21E-15162238IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.3E-16166236IPR004088K Homology domain, type 1
SMARTSM003223.1E-12166236IPR004087K Homology domain
PROSITE profilePS5008414.487167231IPR004088K Homology domain, type 1
PfamPF000137.5E-12169233IPR004088K Homology domain, type 1
CDDcd001054.66E-14169231No hitNo description
SuperFamilySSF902292.22E-9265297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-16265298IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-7267293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.319267294IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-10268292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDFRKRSRNE AGSNFNGGLK KSKPEMDSLS GGIGSKTKPC TKFFSTAGCP FGESCHFLHH  60
VPGGYNAVAQ MMNLGSAPPA SRNVAAPPMS NGNAPAVKTK LCNKFNTAEG CKFGDTCNFA  120
HGEWQIGKPI MPSQEDPRAM GVGPAPSRFG GRTEPPVSGP AASFGTTATA KISVDSSLAG  180
AIIGKGGVNS KQICRQTGAK LAIREHETDI NLRNIELEGT FEQISQASAM VRELINSLGP  240
VGGPGRAPSG HGRGPAGPGG PAPPMSNYKT KLCENFAKGS CTFGDRCHFA HGNDEMRKTG  300
T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020221
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2445800.0AC244580.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-40g6 map 10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362228.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_006362229.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-105C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM1AT950.0M1AT95_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000296830.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-86C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]