PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020161
Common NameLOC102578479
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 433aa    MW: 46691.2 Da    PI: 8.6298
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020161genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.6e-114671126
                          --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                          ++ + C++++r+G C yG++C+F+H+
  PGSC0003DMP400020161 46 PGVPDCSYYLRNGSCGYGPNCRFNHP 71
                          5789*********************8 PP
2zf-CCCH40.44.9e-1394119227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C++f+rtGtCk+G +CkF+H++
  PGSC0003DMP400020161  94 GEPICQYFLRTGTCKFGVSCKFHHPR 119
                           579*********************96 PP
3zf-CCCH34.43.8e-11143165527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                           +C ++++tG+Ck+G +CkF+H++
  PGSC0003DMP400020161 143 ECTYYLKTGHCKFGITCKFHHPQ 165
                           7********************97 PP
4zf-CCCH37.83.3e-12296321227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C+++ +tG Ck+G++CkF+H+p
  PGSC0003DMP400020161 296 GQSICQYYVKTGDCKFGSSCKFHHPP 321
                           7899********************97 PP
5zf-CCCH32.81.2e-10342367227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +  +C+f++  G+Ck+G+ CkF H++
  PGSC0003DMP400020161 342 GVQPCSFYLLKGFCKFGSACKFDHPM 367
                           6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.844573IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-64572IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-94771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-64974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-55171IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-792119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.71392120IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-1094119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-695120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-697119IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-5138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295138166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6142166IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8143165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-4144164IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6294321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854294322IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9296321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6297322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-6298320IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-7340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.394340368IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8342367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5342369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4344365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MELYGPSTGS NGSQSDHQSE WVAVEQETGS MQKLGLFGRE VYPERPGVPD CSYYLRNGSC  60
GYGPNCRFNH PSDRDRRSGG KMQLEGVEFP ERTGEPICQY FLRTGTCKFG VSCKFHHPRN  120
FGGTLSNIPL NTYGYPLRTG EIECTYYLKT GHCKFGITCK FHHPQPAGMS VPAPARPFYP  180
TVQSLPAPPE ECNSALTGLR VARPPILPGS YVPSAYGPVL LHPGVVTIQN WSPYSGPVSP  240
ALSPGVHPSA GLTSVYGMSP LASSPHAFAG PYSPLPPAGS PSSKTQKEKS FPERPGQSIC  300
QYYVKTGDCK FGSSCKFHHP PDWIASKTNC AISPIGLPLR PGVQPCSFYL LKGFCKFGSA  360
CKFDHPMGTV QYSSSASSLP DLQVAPYMLR SSFTLAPMLL PELQAGFVTG SKVDVSLSRA  420
PSSMKVQLVQ LT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020161
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-163HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359420.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
SwissprotQ84W911e-159C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLM1AT370.0M1AT37_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000296030.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-161C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]