PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400020159 | ||||||||
Common Name | LOC102578479 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 433aa MW: 46691.2 Da PI: 8.6298 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.9 | 2.6e-11 | 46 | 71 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++ + C++++r+G C yG++C+F+H+ PGSC0003DMP400020159 46 PGVPDCSYYLRNGSCGYGPNCRFNHP 71 5789*********************8 PP | |||||||
2 | zf-CCCH | 40.4 | 4.9e-13 | 94 | 119 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++f+rtGtCk+G +CkF+H++ PGSC0003DMP400020159 94 GEPICQYFLRTGTCKFGVSCKFHHPR 119 579*********************96 PP | |||||||
3 | zf-CCCH | 34.4 | 3.8e-11 | 143 | 165 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C ++++tG+Ck+G +CkF+H++ PGSC0003DMP400020159 143 ECTYYLKTGHCKFGITCKFHHPQ 165 7********************97 PP | |||||||
4 | zf-CCCH | 37.8 | 3.3e-12 | 296 | 321 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG Ck+G++CkF+H+p PGSC0003DMP400020159 296 GQSICQYYVKTGDCKFGSSCKFHHPP 321 7899********************97 PP | |||||||
5 | zf-CCCH | 32.8 | 1.2e-10 | 342 | 367 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C+f++ G+Ck+G+ CkF H++ PGSC0003DMP400020159 342 GVQPCSFYLLKGFCKFGSACKFDHPM 367 6789********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.84 | 45 | 73 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-6 | 45 | 72 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.3E-9 | 47 | 71 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-6 | 49 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 51 | 71 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-7 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.713 | 92 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-10 | 94 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-6 | 97 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.6E-5 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.295 | 138 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.94E-6 | 142 | 166 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-8 | 143 | 165 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-4 | 144 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-6 | 294 | 321 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.854 | 294 | 322 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 296 | 321 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 297 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.8E-6 | 298 | 320 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.4E-7 | 340 | 367 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.394 | 340 | 368 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-8 | 342 | 367 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 342 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 344 | 365 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MELYGPSTGS NGSQSDHQSE WVAVEQETGS MQKLGLFGRE VYPERPGVPD CSYYLRNGSC 60 GYGPNCRFNH PSDRDRRSGG KMQLEGVEFP ERTGEPICQY FLRTGTCKFG VSCKFHHPRN 120 FGGTLSNIPL NTYGYPLRTG EIECTYYLKT GHCKFGITCK FHHPQPAGMS VPAPARPFYP 180 TVQSLPAPPE ECNSALTGLR VARPPILPGS YVPSAYGPVL LHPGVVTIQN WSPYSGPVSP 240 ALSPGVHPSA GLTSVYGMSP LASSPHAFAG PYSPLPPAGS PSSKTQKEKS FPERPGQSIC 300 QYYVKTGDCK FGSSCKFHHP PDWIASKTNC AISPIGLPLR PGVQPCSFYL LKGFCKFGSA 360 CKFDHPMGTV QYSSSASSLP DLQVAPYMLR SSFTLAPMLL PELQAGFVTG SKVDVSLSRA 420 PSSMKVQLVQ LT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400020159 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 1e-163 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006359420.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2 | ||||
Swissprot | Q84W91 | 1e-159 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | M1AT37 | 0.0 | M1AT37_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400029603 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-161 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400020159 |
Entrez Gene | 102578479 |
Publications ? help Back to Top | |||
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