PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020158
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 265aa    MW: 27893.2 Da    PI: 9.2026
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020158genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.7e-12128153227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C+++ +tG Ck+G++CkF+H+p
  PGSC0003DMP400020158 128 GQSICQYYVKTGDCKFGSSCKFHHPP 153
                           7899********************97 PP
2zf-CCCH33.76.2e-11174199227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +  +C+f++  G+Ck+G+ CkF H++
  PGSC0003DMP400020158 174 GVQPCSFYLLKGFCKFGSACKFDHPM 199
                           6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-6126153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854126154IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-10128153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-6129154IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-6130152IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-7172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.394172200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6174201IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8174199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4176197IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSVPAPARPF YPTVQSLPAP PEECNSALTG LRVARPPILP GSYVPSAYGP VLLHPGVVTI  60
QNWSPYSGPV SPALSPGVHP SAGLTSVYGM SPLASSPHAF AGPYSPLPPA GSPSSKTQKE  120
KSFPERPGQS ICQYYVKTGD CKFGSSCKFH HPPDWIASKT NCAISPIGLP LRPGVQPCSF  180
YLLKGFCKFG SACKFDHPMG TVQYSSSASS LPDLQVAPYM LRSSFTLAPM LLPELQAGFV  240
TGSKVDVSLS RAPSSMKVQL VQLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020158
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-164HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359417.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_006359418.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_006359419.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_006359420.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
SwissprotQ84W915e-80C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLM1AT360.0M1AT36_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000296030.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.25e-83C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]