PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400020149
Common NameLOC102582339
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CO-like
Protein Properties Length: 380aa    MW: 43059.9 Da    PI: 6.1149
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400020149genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.26.1e-072163339
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                           + C+ ++++ + l+C+ ++  lC +C  e H+       Ht+
  PGSC0003DMP400020149 21 RHLCDFCGNNTALLYCRADSAKLCFTCDREVHSTnqlftkHTR 63
                          679*****************************66778888875 PP
2zf-B_box23.51.2e-0766107542
              zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 
                            C+++++ ++++ C + ++ lC++C  e+H+     H+++pl
  PGSC0003DMP400020149  66 LCNLCDSSPASILCCTESSVLCQNCDWESHNKqlslHERRPL 107
                           6*****************************779999999886 PP
3CCT61.92e-21328369142
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 
                           Re a++RYkeK+ktR++eK+irYesRKa+Ae+R R+KGrF+k
  PGSC0003DMP400020149 328 RETAVSRYKEKKKTRRYEKHIRYESRKARAETRTRIKGRFAK 369
                           99***************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.4521966IPR000315B-box-type zinc finger
SMARTSM003361.5E-131966IPR000315B-box-type zinc finger
PfamPF006439.6E-62163IPR000315B-box-type zinc finger
CDDcd000211.27E-62363No hitNo description
PROSITE profilePS501199.76962107IPR000315B-box-type zinc finger
CDDcd000211.05E-466107No hitNo description
SMARTSM003360.3167107IPR000315B-box-type zinc finger
PfamPF062033.6E-16328370IPR010402CCT domain
PROSITE profilePS5101714.862328370IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MTELKKDQEN HQQQQQEPQR RHLCDFCGNN TALLYCRADS AKLCFTCDRE VHSTNQLFTK  60
HTRWLLCNLC DSSPASILCC TESSVLCQNC DWESHNKQLS LHERRPLEGF SGCPSVSELL  120
SILGFEDLGK KELLYGGDGS YGFSDWVIWD TPSVVSLDDL IANNDSEHNF QAIGVPPLPK  180
NRNAACGKHK EEILSQLREL SKLEPNSGDD QDETVPTIGF QSMEPVQNCP LRFKGLGFMQ  240
NSDQHVVPSS EGSAFHWHGD TGEFADQGFS SSLMDCFIET KCLLPNRDSD VCDASGGANE  300
EQSHNPPTTE TFQMVPKVVH RELNSQERET AVSRYKEKKK TRRYEKHIRY ESRKARAETR  360
TRIKGRFAKM DYRDSSVHQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400020149
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136850.0BT013685.1 Lycopersicon esculentum clone 132507F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359430.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
TrEMBLM1AT270.0M1AT27_SOLTU; B-box zinc finger protein 9
STRINGPGSC0003DMT4000295910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.17e-83B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]