PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400019513 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 187aa MW: 20940.3 Da PI: 4.9039 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.4 | 1.5e-07 | 145 | 165 | 1 | 21 |
AP2 1 sgykGVrwdkkrgrWvAeIrd 21 s+y+GV++++++grW+++I+ PGSC0003DMP400019513 145 SQYRGVTFYRRTGRWESHIWL 165 78*****************97 PP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MFDLNLSFDD VPVEPISVLG EVASEKVNEL LFNQMENSGT SNSSVVNMET SSTAGDDEYF 60 SSDHRHRDGF TFAILKADKE ANNEYEGSGD RGGFVIKELF PLVNGEVGLD LPANCGDLTE 120 QRIGKTPQQR LQAKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWLVIITC VFILEQFFFV 180 VSSQAQ* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400019513 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-116 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339057.1 | 1e-116 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like | ||||
TrEMBL | M1ARJ3 | 1e-135 | M1ARJ3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400028706 | 2e-89 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60120.1 | 5e-18 | target of early activation tagged (EAT) 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400019513 |
Publications ? help Back to Top | |||
---|---|---|---|
|