PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400019404
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family FAR1
Protein Properties Length: 125aa    MW: 14473.7 Da    PI: 9.2626
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400019404genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1332e-108485191
                  FAR1 51 errtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                           r+ r++ r gCka++ v+ +k +k  vt++++eH+H+l+p
  PGSC0003DMP400019404  8 PRKARTSRREGCKAMMWVEVNKFDKLAVTRFVKEHTHPLVP 48
                          588999********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-8948IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MKNHYGPPRK ARTSRREGCK AMMWVEVNKF DKLAVTRFVK EHTHPLVPSG CSSGNAMDKK  60
DRRIQELSME LERQDKLCDL YREQLVTFLE NVEQQMELLS KKIQVAVNNI KEVEAEVQKQ  120
PNSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400019404
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754483e-96HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085949.15e-77protein FAR1-RELATED SEQUENCE 2-like isoform X2
TrEMBLM1AR941e-87M1AR94_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000285242e-88(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA116022025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-31FAR1 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]