PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400019227
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 183aa    MW: 21337.8 Da    PI: 5.3634
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400019227genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.7e-16243548
                          -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          T++E+ l+++++ ++G++ W++Iar++  gRt++++k++w++++
  PGSC0003DMP400019227  2 TPQEERLILELHSKWGNR-WSRIAREVS-GRTDNEIKNYWRTHM 43
                          9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.411147IPR017930Myb domain
CDDcd001679.23E-11143No hitNo description
SMARTSM007177.2E-11145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-19244IPR009057Homeodomain-like
PfamPF002493.9E-14242IPR001005SANT/Myb domain
SuperFamilySSF466894.52E-12248IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MTPQEERLIL ELHSKWGNRW SRIAREVSGR TDNEIKNYWR THMRKQAQDE RKLNKASSSI  60
SPSSSFSNTS SFSSNSPDVD FTPIMENNER NFYPTGGLQK KVVDHDKGKN MKVYSMDDIW  120
KDIELSEENE TKSKQIMPSP IWDYCPNTLW MADDQEESKM FPMFYCLDNQ DNTFLANKGL  180
FV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400019227
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366918.11e-134PREDICTED: transcription factor MYB48-like
TrEMBLM1AQV31e-134M1AQV3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000282311e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.27e-32myb domain protein 48
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]