PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400019035 | ||||||||
Common Name | LOC102585187 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 28699.4 Da PI: 7.5568 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 7e-20 | 115 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta +Aaka+++a+ kl+g PGSC0003DMP400019035 115 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAVDAAKAYDRAAFKLRG 165 8********.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.10E-33 | 114 | 173 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.6E-33 | 114 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-38 | 115 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.7E-14 | 115 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-23 | 115 | 175 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.118 | 115 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-14 | 116 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-14 | 155 | 175 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGSPQETCTS LDLIRQHLLD DFAFMENYSQ SCGESVDKSC FSFETTQSSN LDDISSFFSA 60 SSKTEYDGFF EFKAKPHVMS SKQSNFKERK PSLNVAIPAK PVVVQKVEVE SEKKHYRGVR 120 QRPWGKFAAE IRDPNRKGTR VWLGTFDTAV DAAKAYDRAA FKLRGSKAIL NFPLEVANFK 180 QQNHDDEIKT SGNKRVRETE QLVINKERKI EEEERIVPTA AAPLTPSSWS TIWDEKGIFE 240 VPPLSPLSHL VMI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-32 | 114 | 176 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-32 | 111 | 176 | 1 | 66 | ATERF1 |
3gcc_A | 4e-32 | 111 | 176 | 1 | 66 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400019035 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN711504 | 0.0 | JN711504.2 Solanum tuberosum ethylene response factor ERF6 (ERF6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006358219.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
Swissprot | Q9LW48 | 1e-106 | ERF5_NICSY; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | M1AQE1 | 0.0 | M1AQE1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400027937 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400019035 |
Entrez Gene | 102585187 |
Publications ? help Back to Top | |||
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