PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400019035
Common NameLOC102585187
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 254aa    MW: 28699.4 Da    PI: 7.5568
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400019035genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-20115165255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta +Aaka+++a+ kl+g
  PGSC0003DMP400019035 115 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAVDAAKAYDRAAFKLRG 165
                           8********.**********9...6566*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.10E-33114173No hitNo description
Gene3DG3DSA:3.30.730.106.6E-33114174IPR001471AP2/ERF domain
SMARTSM003801.3E-38115179IPR001471AP2/ERF domain
PfamPF008478.7E-14115165IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-23115175IPR016177DNA-binding domain
PROSITE profilePS5103224.118115173IPR001471AP2/ERF domain
PRINTSPR003679.5E-14116127IPR001471AP2/ERF domain
PRINTSPR003679.5E-14155175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGSPQETCTS LDLIRQHLLD DFAFMENYSQ SCGESVDKSC FSFETTQSSN LDDISSFFSA  60
SSKTEYDGFF EFKAKPHVMS SKQSNFKERK PSLNVAIPAK PVVVQKVEVE SEKKHYRGVR  120
QRPWGKFAAE IRDPNRKGTR VWLGTFDTAV DAAKAYDRAA FKLRGSKAIL NFPLEVANFK  180
QQNHDDEIKT SGNKRVRETE QLVINKERKI EEEERIVPTA AAPLTPSSWS TIWDEKGIFE  240
VPPLSPLSHL VMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-32114176163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-32111176166ATERF1
3gcc_A4e-32111176166ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400019035
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7115040.0JN711504.2 Solanum tuberosum ethylene response factor ERF6 (ERF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358219.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ9LW481e-106ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLM1AQE10.0M1AQE1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000279370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-39ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]