PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400019034
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 104aa    MW: 11708.2 Da    PI: 10.2276
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400019034genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.86.1e-0975103233
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfsl 33 
                           +y+GVr+++ +g+++AeIrdp+      r++l
  PGSC0003DMP400019034  75 QYRGVRRRP-WGKYAAEIRDPTRK--GSRVWL 103
                           7********.**********8432..388886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.4E-1374103IPR001471AP2/ERF domain
PROSITE profilePS5103214.07875103IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-875103IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MTSKEEEKLM LQLISEHLLG DSFIHYDPLP FFTSHHKPDN FILSPTTSSV GSNPDRNITG  60
SGYGSSTANE GKKKQYRGVR RRPWGKYAAE IRDPTRKGSR VWL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17181KKKQYRGVRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400019034
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-108HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069273.14e-59ethylene-responsive transcription factor ERF106-like
TrEMBLM1AQE07e-71M1AQE0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000279361e-71(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.16e-18ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]