PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400018957 | ||||||||
Common Name | LOC107058986 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 262aa MW: 30341.8 Da PI: 4.57 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.8e-20 | 116 | 166 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd k +r++lg+f taeeAa a+++a+++++g PGSC0003DMP400018957 116 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFNTAEEAAMAYDKAALRIRG 166 7********.**********3...2234*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-31 | 115 | 174 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-24 | 116 | 176 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.79E-31 | 116 | 175 | No hit | No description |
PROSITE profile | PS51032 | 23.907 | 116 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-36 | 116 | 180 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-14 | 116 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-11 | 117 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-11 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MTTHVEKNNQ QQDQVACEEI LENVWANFIS KNDQNSQKVT NEYCCEQYWE QLPILERLPS 60 LGRWISMGAE TWEDILDGII IPPQDNKNSN DESTNKDDED VVNVEKKKMV INNTRHYRGV 120 RRRPWGKYAA EIRDSSRKGA RVWLGTFNTA EEAAMAYDKA ALRIRGPKAY LNFPYEIVAQ 180 AMGISNCPNE KEWTFSSSSQ YNSRKRVSRD WNMNENLDEI NQLPKEKKIM RSMEEDLLND 240 LDILEFEDLG SDYLDGLLSS L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-28 | 115 | 177 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400018957 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015160785.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF091 | ||||
TrEMBL | M1AQ89 | 0.0 | M1AQ89_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400027839 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11237 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 4e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400018957 |
Entrez Gene | 107058986 |
Publications ? help Back to Top | |||
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