PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018923
Common NameLOC102595987
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 311aa    MW: 33794.1 Da    PI: 7.0112
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018923genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.67.5e-32166222158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +ep+YVNaKQy++Il+RR++Rak+e ekkl +k+rkpylheSRh+hAl+R+R+sgGrF
  PGSC0003DMP400018923 166 QEPVYVNAKQYHGILRRRESRAKAELEKKL-IKGRKPYLHESRHQHALKRARASGGRF 222
                           69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.3E-35164225IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.675165225IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.2E-27167222IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.9E-23168190IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860170190IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.9E-23199222IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQSESKSANC EEARTYNVPN STLEPWWNTT GNNPVSLGLM RGSASDSPPP EQAVDGRSQS  60
DGGSNEEDDD APEKSQRTIP MHSDGSYAQV DQNLQPIAST IPPKDDGSIT QPPQLELVAH  120
SMACAPNLYV DPYYGGILAP FGQPMVPSHV LDMHHPRMPL PHEMAQEPVY VNAKQYHGIL  180
RRRESRAKAE LEKKLIKGRK PYLHESRHQH ALKRARASGG RFAKKSDAGT SKGEGSGSAV  240
SLQSVHSSGS EPLLSNAADV PEWHKDRSLA ERQHSYSNGN GYGKQSSFQE SKYQAQSAQV  300
GEGGSSGQRW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-18166240276NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400018923
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-164HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366543.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
TrEMBLM1AQ620.0M1AQ62_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000277850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.42e-54nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]