PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400018892 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GATA | ||||||||
Protein Properties | Length: 129aa MW: 14013.5 Da PI: 4.2864 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 35.2 | 1.7e-11 | 1 | 24 | 12 | 35 |
GATA 12 WRrgpdgnktLCnaCGlyyrkkgl 35 +Rrgp g++tLCnaCGl+++ kg+ PGSC0003DMP400018892 1 MRRGPLGPRTLCNACGLMWANKGM 24 5*******************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00320 | 6.2E-9 | 1 | 23 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.9E-9 | 1 | 28 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.69E-10 | 1 | 31 | No hit | No description |
SuperFamily | SSF57716 | 9.5E-7 | 1 | 35 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MRRGPLGPRT LCNACGLMWA NKGMLRDITK GGSHVPFDKN EPGTPDIKLS TFAPENSYLK 60 QHQEDMQEAT ENFADSSPFC IGSSSVNIDE EDNLDALANA SGTEFEIPAN FDEQIGIDSH 120 MSVHWPAT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400018892 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351718.1 | 5e-90 | PREDICTED: GATA transcription factor 24-like isoform X3 | ||||
Swissprot | Q6Z433 | 1e-13 | GAT17_ORYSJ; GATA transcription factor 17 | ||||
TrEMBL | M1AQ43 | 7e-92 | M1AQ43_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1AQ46 | 1e-88 | M1AQ46_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400027729 | 2e-86 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-15 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400018892 |
Publications ? help Back to Top | |||
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