PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400018367 | ||||||||
Common Name | LOC102596640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 191aa MW: 21599.1 Da PI: 9.6063 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8.3e-13 | 22 | 65 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL A++Y+k+L PGSC0003DMP400018367 22 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 65 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.643 | 16 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-15 | 19 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-13 | 22 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.22E-5 | 23 | 70 | No hit | No description |
Pfam | PF00010 | 1.8E-10 | 23 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.9E-16 | 23 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 3.97E-4 | 116 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MGNVGEKKNK IRKVEGQPSK NLMAERRRRK RLNDRLSMLR SIVPKISKMD RTSILGDAID 60 YMKELLEKIH TLREDDNVKD EIKDIKFVGN FKELKPNEAL VKKPPKFEVE RRNEDTRIEI 120 CCSAKPGLLL STVSTLEALG LDVQQCVISC FSDFSLQASC SEAREHRTIL SGEDVKQTLF 180 KTAGFGGRCL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-13 | 17 | 87 | 5 | 76 | Transcription factor MYC2 |
5gnj_B | 2e-13 | 17 | 87 | 5 | 76 | Transcription factor MYC2 |
5gnj_E | 2e-13 | 17 | 87 | 5 | 76 | Transcription factor MYC2 |
5gnj_F | 2e-13 | 17 | 87 | 5 | 76 | Transcription factor MYC2 |
5gnj_G | 2e-13 | 17 | 87 | 5 | 76 | Transcription factor MYC2 |
5gnj_I | 2e-13 | 17 | 87 | 5 | 76 | Transcription factor MYC2 |
5gnj_M | 2e-13 | 17 | 87 | 5 | 76 | Transcription factor MYC2 |
5gnj_N | 2e-13 | 17 | 87 | 5 | 76 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 31 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400018367 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 4e-81 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 4e-81 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006346887.1 | 1e-135 | PREDICTED: transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 3e-82 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | M1ANW6 | 1e-135 | M1ANW6_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1ANW7 | 1e-134 | M1ANW7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400026937 | 1e-134 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 4e-84 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400018367 |
Entrez Gene | 102596640 |
Publications ? help Back to Top | |||
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