PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018208
Common NameLOC102591016
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 158aa    MW: 17862.5 Da    PI: 8.8619
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018208genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.3e-211364256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          +y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f taeeAa+a+++a+ +l+g+
  PGSC0003DMP400018208 13 KYRGIRRRP-WGKYAAEIRDPNRNG--ARLWLGTFETAEEAARAYDRAAFSLRGH 64
                          8********.**********96665..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-321372IPR001471AP2/ERF domain
PfamPF008471.2E-141364IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-241372IPR016177DNA-binding domain
PROSITE profilePS5103225.0531371IPR001471AP2/ERF domain
SMARTSM003803.4E-351377IPR001471AP2/ERF domain
CDDcd000181.87E-291373No hitNo description
PRINTSPR003671.5E-111425IPR001471AP2/ERF domain
PRINTSPR003671.5E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MENEDQRGRR ENKYRGIRRR PWGKYAAEIR DPNRNGARLW LGTFETAEEA ARAYDRAAFS  60
LRGHQAILNF PNDGHYHINN NTNVPLGPGP NYNVPSTMVN NMNMSSSSAS ASASASASSD  120
HRHDHGEKVE FEYLDNNLLD ELLASQVHRH DNKRPKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-29573274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400018208
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351651.11e-114PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLM1ANK31e-112M1ANK3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000266781e-113(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-26ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]