PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400018183

Common Name

LOC102596236

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 278aa MW: 32263.2 Da PI: 5.594

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400018183	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.2	3.4e-49	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrF P+deelv++yL kk++++++ ++ e+d++++ePw+Lp+++k +++ewyfFs rd+kyatg r+nrat sgyWkatgkd PGSC0003DMP400018183 10 LPPGFRFYPSDEELVCHYLFKKIANEDVLK-GTLIEIDLHTCEPWQLPEMAKLNSSEWYFFSFRDRKYATGFRTNRATISGYWKATGKD 97 79**********************9655.6799*********88888999***************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++v++ +++ vg++ktLvfy +rap+g kt W+mhe+rle PGSC0003DMP400018183 98 RTVVDPkTRTIVGMRKTLVFYMNRAPNGIKTGWIMHEFRLE 138 *855667*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-60	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.082	10	156	IPR003441	NAC domain
Pfam	PF02365	4.4E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLFK KIANEDVLKG TLIEIDLHTC EPWQLPEMAK 60 LNSSEWYFFS FRDRKYATGF RTNRATISGY WKATGKDRTV VDPKTRTIVG MRKTLVFYMN 120 RAPNGIKTGW IMHEFRLENP HIPPKEDWVL CRVFHKAKAE NNNNNNNNNI FNTQNMYEVG 180 VNSSPNMDQS HIALPYAAFS QRQVGHQSQK LFDLMEPNNN QSSYVQLMSQ EMKEPQSNDE 240 MAEDDDEYGF LLDMNFEDPN LQDGSRSTAF EHWEHVI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-49	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-49	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-49	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-49	9	156	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	7e-49	9	156	19	168	NAC domain-containing protein 19
3swm_B	7e-49	9	156	19	168	NAC domain-containing protein 19
3swm_C	7e-49	9	156	19	168	NAC domain-containing protein 19
3swm_D	7e-49	9	156	19	168	NAC domain-containing protein 19
3swp_A	7e-49	9	156	19	168	NAC domain-containing protein 19
3swp_B	7e-49	9	156	19	168	NAC domain-containing protein 19
3swp_C	7e-49	9	156	19	168	NAC domain-containing protein 19
3swp_D	7e-49	9	156	19	168	NAC domain-containing protein 19
4dul_A	5e-49	9	156	16	165	NAC domain-containing protein 19
4dul_B	5e-49	9	156	16	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400018183

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-128	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351666.1	0.0	PREDICTED: NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	2e-63	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	M1ANH8	0.0	M1ANH8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400026644	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1882	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	9e-93	NAC domain containing protein 74

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400018183
Entrez Gene	102596236

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]