PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400018171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 22839.5 Da PI: 4.5829 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.2e-19 | 69 | 119 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r++lg+f+ aeeAa a+++a+ +++g PGSC0003DMP400018171 69 NYRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDNAEEAALAYDQAAFAMRG 119 59*******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.2E-37 | 69 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 69 | 129 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-13 | 69 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.7E-31 | 69 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.708 | 69 | 127 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.15E-29 | 69 | 128 | No hit | No description |
PRINTS | PR00367 | 1.5E-10 | 70 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MDYSSWDNLL FQYNSLPFNV NDTEDMFLFN LVAEGSSQET VNSPSGTYGI KEEEVTSYEE 60 ETEREKEKNY RGVRKRPWGK FAAEIRDSTR NGVRVWLGTF DNAEEAALAY DQAAFAMRGS 120 MAILNFPVEI VKESLSEMKC RFDENCSPVI ELKKRYSMRR KSVSRRNRAR KDVVVFEDLG 180 AEYLEELLIS SESITNW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-30 | 66 | 130 | 2 | 66 | ATERF1 |
3gcc_A | 2e-30 | 66 | 130 | 2 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 171 | RRNRARKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400018171 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351652.2 | 1e-144 | PREDICTED: ethylene-responsive transcription factor 1B | ||||
Swissprot | A0A3Q7I5Y9 | 1e-119 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | M1ANG6 | 1e-142 | M1ANG6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400026627 | 1e-143 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-44 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400018171 |
Publications ? help Back to Top | |||
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