PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018055
Common NameLOC102594182
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 236aa    MW: 26275.1 Da    PI: 8.4821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018055genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.8e-125096354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          ++h+e+ErrRR+riN  +++Lr l+P++      K++Ka+ L ++v  +k L
  PGSC0003DMP400018055 50 KSHSEAERRRRQRINAHLSTLRNLVPSS-----DKMDKAALLAEVVCQVKRL 96
                          58*************************8.....7********9999777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.7544796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-1350104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-95096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.09E-105098No hitNo description
SuperFamilySSF474592.09E-1251102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1053102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.77E-7135201No hitNo description
Gene3DG3DSA:3.30.70.2601.3E-4135178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNLGEFCENE AKGVVQSLVL DSEKSELVKA SGRVEKKIGK SEGKTIAALK SHSEAERRRR  60
QRINAHLSTL RNLVPSSDKM DKAALLAEVV CQVKRLKETA TNVSERFFIP LDSDEIKVEI  120
IAENAIDGTC LYRASICCEY RPHLLSDLKE TINSLHVNLV KSEISTLGSR VKNVFLFTNL  180
IDGGRANTEA REIFLSSVRQ AFSCILDKVS AFPEYSAYPN KRQRISCFES SSLLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400018055
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362421.11e-171PREDICTED: transcription factor bHLH30-like
TrEMBLM1AN651e-170M1AN65_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000264491e-170(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67302230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-33bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]