PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400018041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Trihelix | ||||||||
Protein Properties | Length: 290aa MW: 33361.8 Da PI: 5.9068 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.5 | 1.1e-15 | 24 | 114 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +W++q + +L++a ++ +l+rg+l++++W++vs+ + ++++ +r+ +qCk++++ l+k+yk +k+ ++ + + +s++p+f++ PGSC0003DMP400018041 24 CWSEQATWTLVDAWGRRYMELNRGNLRQKDWQQVSDSVnvlhgHSKKSRRTDVQCKNRIDTLKKKYKVEKAKIIESNGTLTSSWPFFER 112 7*****************************************99***************************999998888899*****9 PP trihelix 85 le 86 l+ PGSC0003DMP400018041 113 LD 114 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.0E-23 | 22 | 115 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGEITESSTQ VTMSSRPLPF REDCWSEQAT WTLVDAWGRR YMELNRGNLR QKDWQQVSDS 60 VNVLHGHSKK SRRTDVQCKN RIDTLKKKYK VEKAKIIESN GTLTSSWPFF ERLDVLIGNS 120 DKKVTPVMVS PLPLPMSSPP MGVPLPYRRS AMVTPVSLPQ KRQLPAFDES CFRRNYSAVA 180 AAAAAGGGEE DYDDEEEEED VEMTEESWEE DGMRRLAKAI ERFGDIYERV EGMKQRQMVE 240 LEKQRMQFAK DLEVQRMQLF MDTQVQLEKI KHTKRSGSDG IKFTPFDFS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400018041 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362410.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | M1AN54 | 0.0 | M1AN54_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400026432 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1318 | 23 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 3e-32 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400018041 |
Publications ? help Back to Top | |||
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