PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400018040
Common NameLOC102590724
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 284aa    MW: 32700 Da    PI: 5.5715
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400018040genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.61.1e-1524114186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                           +W++q + +L++a  ++  +l+rg+l++++W++vs+ +     ++++ +r+ +qCk++++ l+k+yk +k+  ++ + + +s++p+f++
  PGSC0003DMP400018040  24 CWSEQATWTLVDAWGRRYMELNRGNLRQKDWQQVSDSVnvlhgHSKKSRRTDVQCKNRIDTLKKKYKVEKAKIIESNGTLTSSWPFFER 112
                           7*****************************************99***************************999998888899*****9 PP

              trihelix  85 le 86 
                           l+
  PGSC0003DMP400018040 113 LD 114
                           97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.9E-2422115No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGEITESSTQ VTMSSRPLPF REDCWSEQAT WTLVDAWGRR YMELNRGNLR QKDWQQVSDS  60
VNVLHGHSKK SRRTDVQCKN RIDTLKKKYK VEKAKIIESN GTLTSSWPFF ERLDVLIGNS  120
DKKVTPVMVS PLPLPMSSPP MGVPLPYRRS AMVTPVSLPQ KRQLPAFDES CFRRNYSAVA  180
AAAAAGGGEE DYDDEEEEED VEMTEESWEE DGMRRLAKAI ERFGDIYERV EGMKQRQMVE  240
LEKQRMQFAK DLEVQRMQLF MDTQVQLEKI KHTKRSGSDD LYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400018040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362410.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLM1AN530.0M1AN53_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000264320.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-32sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]