PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400018036 | ||||||||
Common Name | LOC102585011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 349aa MW: 40689.8 Da PI: 9.4907 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.3 | 6.1e-32 | 70 | 123 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+e+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ PGSC0003DMP400018036 70 PRLRWTPDLHRSFVHAIERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 123 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-29 | 66 | 124 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.64 | 66 | 126 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-14 | 70 | 124 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.7E-23 | 70 | 125 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-8 | 71 | 122 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MAENNSVEYI MEKASSSSID LNEDNKGELE EEEEVIEVED SSEKEIEGNY NTSSDVEKKN 60 VRQYVRSKFP RLRWTPDLHR SFVHAIERLG GQERATPKLV LQMMNVRGLS IAHVKSHLQM 120 YRSKKLDESG QVLGRGNNRS MQGRSYFFRN HLGGQRYNPI QDFKMKNGAI VLARNFNYDN 180 HALKSHSFSR PSYQAKNIFS RYLPWSSDNQ GSLLNSKFQK GEDLLRMKSW QTPRQVVIEQ 240 NGIMPIRSTQ FLEQKKFIPN QWEEKTAKNS HFLLQENLGQ PYSKWNCRNN ALDQNLVTPC 300 RIKMKEDKSG FEEKEWLPDL QLRLSRSTDD KINEKRMDQS DINTMLSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-18 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-18 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 6e-18 | 71 | 125 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-18 | 71 | 125 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-18 | 71 | 125 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-18 | 71 | 125 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-18 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-18 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-18 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-18 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-18 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-18 | 71 | 125 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400018036 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-146 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362389.1 | 0.0 | PREDICTED: uncharacterized protein LOC102585011 | ||||
TrEMBL | M1AN52 | 0.0 | M1AN52_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400026419 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5516 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 5e-37 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400018036 |
Entrez Gene | 102585011 |
Publications ? help Back to Top | |||
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