PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400017940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 152aa MW: 16830 Da PI: 11.0705 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 6e-19 | 6 | 55 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +grW AeIrd r r++lg+f+t+eeAa+a++aa++ l+g PGSC0003DMP400017940 6 SYRGVRNRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEEAARAYDAAARWLRG 55 69****777.**********32....25**********************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.14E-18 | 5 | 64 | No hit | No description |
SMART | SM00380 | 1.4E-30 | 6 | 69 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-13 | 6 | 55 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.733 | 6 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 6 | 64 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-29 | 6 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
PSVEKSYRGV RNRPWGRWSA EIRDRIGRCR HWLGTFDTPE EAARAYDAAA RWLRGSKART 60 NFQIPPIVPL PTSPTSTSSS SNSSREMKMK NGGAVANNQR KCSVVTSTAH LFSSNEFNKK 120 VSVTVELDLK LGFGRKLGGY WVYGAGSWFM G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-16 | 7 | 62 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400017940 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU906242 | 0.0 | GU906242.1 Solanum tuberosum clone BAC BC206B16 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015163987.1 | 9e-81 | PREDICTED: ethylene-responsive transcription factor ERF084-like | ||||
TrEMBL | M1AMY1 | 1e-107 | M1AMY1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400026269 | 1e-108 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11552 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80580.1 | 4e-22 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400017940 |
Publications ? help Back to Top | |||
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