PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017819
Common NameLOC102591830
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 366aa    MW: 40693 Da    PI: 8.8901
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017819genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.92e-32231286156
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           k+r++W+peLH+rFv+a++qLGG+++AtPk+i+++m+v+gLt+++vkSHLQkYRl+
  PGSC0003DMP400017819 231 KQRRCWSPELHRRFVDALHQLGGAQVATPKQIRDIMQVDGLTNDEVKSHLQKYRLH 286
                           79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-30228289IPR009057Homeodomain-like
PROSITE profilePS5129413.929228288IPR017930Myb domain
SuperFamilySSF466891.97E-17229289IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-26231286IPR006447Myb domain, plants
PfamPF002491.5E-7233284IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGSNSKEMNI DLNFVYVPKL ISDVLTEVSA MDDISKKLTK LNQFLVPLEE ELRKTEAFKR  60
ELPMCMLLLK DAIERLKAEA LLYKEKDKSP VMEEFIPLKK GNSDESGRVK KSNDLSDKKN  120
WMSSAQLWST PVQYESLKSS GVEEKAREKQ YQLGACKLKN ERGAFLPFQG QALKEGKNGL  180
AVKDLSLSMA VTVGEGEKGQ KPIDVSVKRE NGPSNSNGCG VFSQDKSQHR KQRRCWSPEL  240
HRRFVDALHQ LGGAQVATPK QIRDIMQVDG LTNDEVKSHL QKYRLHVRRV PASGCSWSNM  300
DEIGESSKTN GTQSGSPEGP LHFTGSGSAK GVSINEEEDN KSESYNWNGQ LQKSIEGSTI  360
RSSSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13231284255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13231284255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-13231284154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13231284154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13231284154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13231284154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13231284255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13231284255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13231284255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13231284255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13231284255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13231284255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00629PBMTransfer from PK14402.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017819
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-144HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338223.10.0PREDICTED: uncharacterized protein LOC102591830
TrEMBLM1AMN50.0M1AMN5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000260960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84972229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.12e-59G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]