PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017799
Common NameLOC102598089
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CO-like
Protein Properties Length: 406aa    MW: 44940.9 Da    PI: 5.838
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017799genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.35e-061960439
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                          r+C+ +     +++C+ ++ +lC+ C   +H        H++
  PGSC0003DMP400017799 19 RVCDSCRLVTCTIYCQADSAYLCAGCDARIHAAslvasrHKR 60
                          78*****999*********************66777777876 PP
2zf-B_box22.72e-0760104240
              zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                           + ++C+ +e  ++ + C+ +   lC++C   +H+       H ++
  PGSC0003DMP400017799  60 RVWVCEACECAPAAFLCKADAASLCASCDADIHSAnplahrHHRI 104
                           5689****************************9668888554444 PP
3CCT69.77.2e-24336379144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  PGSC0003DMP400017799 336 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 379
                           9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.4141663IPR000315B-box-type zinc finger
SMARTSM003361.6E-41863IPR000315B-box-type zinc finger
CDDcd000212.42E-61963No hitNo description
PROSITE profilePS5011910.63759106IPR000315B-box-type zinc finger
PfamPF006433.4E-660106IPR000315B-box-type zinc finger
CDDcd000217.86E-762106No hitNo description
SMARTSM003366.2E-564106IPR000315B-box-type zinc finger
PfamPF062039.3E-18336378IPR010402CCT domain
PROSITE profilePS5101716.638336378IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MLKKENSGGF DGSSNYWARV CDSCRLVTCT IYCQADSAYL CAGCDARIHA ASLVASRHKR  60
VWVCEACECA PAAFLCKADA ASLCASCDAD IHSANPLAHR HHRIPIIPIP GTLYGPPAVD  120
TVGGDSMMIG GSTGEGTEDD GFLSLTQDAD DTTIDEEDED EAASWLLLNH PVKDNNKNNV  180
HNNNNQTNIY GMLFAGEVVD DYLDLAEYGG DSQFNDQYNV NQQQQHYSVP QKSYGGDSVV  240
PVQDGQGKSL FFYHHQQQSH HLNFQLGMDY DNSYTRLGYP ASMSHSVSVS SMDVSVVPES  300
ALSETSNSHS RPQKGTIDLF SGPPIQIPPQ LTPMDREARV LRYREKKKNR KFEKTIRYAS  360
RKAYAETRPR IKGRFAKRTD VEAEVYQMFS TQLMADSSYR IVPSF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017799
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM8883890.0AM888389.1 Solanum tuberosum subsp. andigena mRNA for CONSTANS protein (CO gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338763.20.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-123COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLM1AML70.0M1AML7_SOLTU; B-box zinc finger protein 2
STRINGPGSC0003DMT4000260680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.16e-80B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]