PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017796
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CO-like
Protein Properties Length: 414aa    MW: 45873.9 Da    PI: 6.1878
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017796genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69.3e-071959438
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                          r+C+ +++   + +C+ ++ +lC+dC   +H        H+
  PGSC0003DMP400017796 19 RVCDSCHSATCTVYCRADSAYLCADCDARIHAAslmasrHE 59
                          79*****************************6566666676 PP
2zf-B_box30.29.1e-1061106342
              zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                            ++C+ +e+ ++ + C+ +   lC++C + +H+       H +vp+
  PGSC0003DMP400017796  61 VWVCEACERAPAAFLCKADAASLCASCDVDIHSAnplarrHHRVPI 106
                           689*****************************66899999877775 PP
3CCT69.77.4e-24344387144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  PGSC0003DMP400017796 344 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 387
                           9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.9831663IPR000315B-box-type zinc finger
SMARTSM003364.5E-91663IPR000315B-box-type zinc finger
CDDcd000215.51E-101963No hitNo description
PROSITE profilePS5011911.06459106IPR000315B-box-type zinc finger
PfamPF006431.0E-760106IPR000315B-box-type zinc finger
CDDcd000211.76E-962106No hitNo description
SMARTSM003363.4E-964106IPR000315B-box-type zinc finger
PROSITE profilePS5101716.638344386IPR010402CCT domain
PfamPF062039.5E-18344386IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MLKKEKSGGF DGSSNNWARV CDSCHSATCT VYCRADSAYL CADCDARIHA ASLMASRHER  60
VWVCEACERA PAAFLCKADA ASLCASCDVD IHSANPLARR HHRVPIMPIP GTLYGPPAVH  120
TVSGGSMMIG GTTGEGTEDD GFLSLTQDAD DTTIDEEDEN EAASWLLLNP PVKNNNKNNI  180
NNNNNNQNNN YGMLFGGEVV DEYLDLAEYG GDSQFNDQYS VNQQQQHYSV PQKSYVEDSV  240
VPVQNGQRKS LILYHQPQQQ QQQQQQSHHL NFQLGMEYDN SNTGYGYPAS LSHSVSISSM  300
DVSVVPESAL SETSNSHPRP PKGTIDLFSG PPIQIPPQLT PMDREARVLR YREKKKNRKF  360
EKTIRYASRK AYAETRPRIK GRFAKRTDVK AEVDQMFSTQ LMTDSSYGIV PSF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017796
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4997540.0DQ499754.3 Solanum tuberosum cultivar Early Rose CONSTANS mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001274795.10.0CONSTANS
SwissprotQ965021e-127COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLM1AML50.0M1AML5_SOLTU; B-box zinc finger protein 1
STRINGPGSC0003DMT4000260650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-106CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]