PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017726
Common NameLOC102595797
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 281aa    MW: 30612.2 Da    PI: 8.7206
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017726genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.57.2e-3954112361
                zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                           +++l+cprCds ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ 
  PGSC0003DMP400017726  54 SENLRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKTI 112
                           57899***************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-2455107IPR003851Zinc finger, Dof-type
PfamPF027011.1E-3256111IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.38557111IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105995IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MIQELFAGNT TTLIGGGDNN ISKLSNITPS SSPISCTTSN SNIPPAAASA NANSENLRCP  60
RCDSPNTKFC YYNNYNLTQP RHFCKTCRRY WTKGGALRNV PIGGGCRKNK TITTAKSTAA  120
KLKNSLPFEL IGKSGIFGEF EQEIIPSNNN PFLFSSPHQN HNPILSLLEG NHHSLNFVKD  180
EHKSIGYNQF PPNNGLWKNN YQENVSSIVG EVQNSRGFQE LYQRLKASTN RCYPDSIHGP  240
SSSSSSMILD SAAVAGGELG FWNPTLSTWL DLPTANGAYL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017726
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338231.10.0PREDICTED: dof zinc finger protein DOF3.5-like
TrEMBLM1AMF60.0M1AMF6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000259840.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.12e-32DOF zinc finger protein 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]