PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017484
Common NameLOC102599232
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 914aa    MW: 102350 Da    PI: 5.8775
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017484genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK94.38.3e-30588639152
                RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++
  PGSC0003DMP400017484 588 AEKTITLQVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 639
                           589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.518578659IPR003035RWP-RK domain
PfamPF020421.1E-25591639IPR003035RWP-RK domain
SuperFamilySSF542778.1E-23803897No hitNo description
SMARTSM006663.0E-24811895IPR000270PB1 domain
PROSITE profilePS5174524.774811896IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2403.7E-20812884No hitNo description
CDDcd064075.59E-38813895No hitNo description
PfamPF005644.5E-18813894IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MDERVIPSNP LLTTPSDYLM DLDYMDGLFL EGCWLESTDG NEFLQHSPGI FNAPFDSSFM  60
WPTTIDANNV EFNGISSKDA QQEKQRPSLT ENLSINHCQE INYAKVQSFG ENMNNAMCTS  120
SLSENHLVEA PELNKRWWIG PKASSSVMDR LIWALGYIRD CSRDKDILLQ LWVPINRDGR  180
RVLSTTNQPF LLDLNCPQLA NYREVSVKYQ FPANEDSKDI VGLPGRVFAD KVPEWTPDVR  240
FFRSEEYPRV EHAQQYDVRG TLAVPVFEQG SRNCLGVIEV VMTTQKIKYR SELESVCKAL  300
EAVDLSTSEV STTQDAKVCD LSYQAALPEV LEVLKSACET HGLPLAQTWV PCIQQGKGGC  360
RHSEENLIHC VSTEDSACYV ADPRVQGFHD ACSEHHLLKG KGVVGRAFNT NQPCFSADLT  420
SYSKSEYPLS HYAKMFGLQA AVAIRLRSIS TGSSDFVLEF FLPSDCRNPE DHRKMLTSLS  480
IIIQNVCRTL RVVTDKELQE ETVSMGEVAN HTVEPHKEHT ETSQERTSWT SCDAEFQESS  540
VMSTFQDEKP DEMLRKDSVE FRHRKNSAYE EGVSRNLGKT GDRRRAKAEK TITLQVLQQY  600
FAGSLKDAAK SIGVCPTTLK RICRQHGIKR WPSRKIKKVG HSLQKIQRVI DSVQGASGTL  660
QIESFYSNFP ELASPNATRM SPFADSKSNE HPTALNTQQE GCITSPNPDA SKSPSSSSSR  720
SSSSSQCCSS GTKPKSPQSQ PSNIVGDEDL IVQEKSVDNA VKRIKSEPEL HLSSEALKTI  780
PRSQSHACVA ENPKSENPLV KRSPSTSQEE APRVKVTHGE EKIRFRMQNS WRYNDLLREI  840
TRRFGIDDPS GLQLKYLDDD SEWVLLTCDA DLEECIDVCM SSSQIQMIKL ILVQDSQHHY  900
GSSFGSSSPI LVQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017484
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342136.10.0PREDICTED: protein NLP4
RefseqXP_006342137.10.0PREDICTED: protein NLP4
RefseqXP_006342138.10.0PREDICTED: protein NLP4
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLM1ALT30.0M1ALT3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000256570.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15982467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]