PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017379
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 315aa    MW: 33561.9 Da    PI: 8.534
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017379genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-055577223
                          EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                           Cp Cg++F+  ++L++H+ + H
  PGSC0003DMP400017379 55 ACPECGEVFPKIESLEHHQAVkH 77
                          6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.9955482IPR007087Zinc finger, C2H2
PROSITE patternPS0002805477IPR007087Zinc finger, C2H2
SuperFamilySSF563994.41E-1979243No hitNo description
Gene3DG3DSA:3.90.228.101.2E-879310IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563994.41E-19271310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
SSSSSRSLAR SNGGGSSTCT TSSRGMQFRK LSGCYECHMI VDPSRYPLPR STICACPECG  60
EVFPKIESLE HHQAVKHAVS ELGPEDSSRN IVEIIFKSSW LKKDNPICKI ERILKVHNTK  120
RTIQRFEDCR DAVKIHAVAT GKKNPRCAAD GNELLRFYCT SLTCTLGARD SSSLCGSVPG  180
CGVCTTIRHG FQGNKTNGVR TTASSGRAHD CLGSGMARRR AMIVCRVIAG RVKQTAKDVR  240
ASPTTEEENC SGSGSGSGSG SGSGSGSSLS ATDSIVYDSV SGHAGIYSNL EELYVFNPRA  300
ILPCFVVIYE ALES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017379
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8097400.0FJ809740.1 Solanum pennellii chromosome 4 clone C04SpBP093E005.P4C04, complete sequence.
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342234.10.0PREDICTED: uncharacterized protein LOC102602448
TrEMBLM1ALJ40.0M1ALJ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000255210.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51952334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-129C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]