PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400017058
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 343aa    MW: 38411.2 Da    PI: 7.4543
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400017058genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1071.1e-332377155
               G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  PGSC0003DMP400017058 23 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 77
                          79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3472080IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-322078IPR009057Homeodomain-like
SuperFamilySSF466891.52E-162278IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-232378IPR006447Myb domain, plants
PfamPF002491.0E-72575IPR001005SANT/Myb domain
PfamPF143793.2E-22119158IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNSHDRPMCV QGDSGLVLTT DPKPRLRWTV ELHERFVDAV TQLGGPDKAT PKTIMRVMGV  60
KGLTLYHLKS HLQKFRLGKQ PHKEFNDHSV KDGDRATSLE LQRNSASSSG MIGRNMNEMQ  120
MEVQRRLHEQ LEVQRHLQLR IEAQGKYMQT ILEKACQTLG GEENMALPTR TFKGIGNHQG  180
GLIPDISAAF KEFGTPPLTF SSFQDLNICG EHIDLHAQSS MGERSSSFDG FMNLSNTTTD  240
HNLSLGKKRS SPYNTSNGKS PFMWSDDFRL HELGSNNEDD HQIIQMERSC NPEIDSVSDI  300
YESKPLLQDE KKFDAKLERP SPRRAAQVSS LSAQGGRNSV FG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-192379157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-192379157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-192379157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-192379157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400017058
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344926.10.0PREDICTED: myb family transcription factor APL isoform X2
SwissprotQ9SAK51e-122APL_ARATH; Myb family transcription factor APL
TrEMBLM1AKW00.0M1AKW0_SOLTU; Uncharacterized protein
STRINGSolyc12g017370.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-125G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  5. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]