PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016867
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 322aa    MW: 36990 Da    PI: 8.2211
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016867genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.54.3e-122504399
                          S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                          g++W vk+  ++ +    l++GW++F+++++L+ gDf+vFk++g++ef   v++f++
  PGSC0003DMP400016867  2 GKKWLVKV--NGWR----LEEGWEKFAEEHDLQLGDFLVFKHEGDMEF--EVSIFDS 50
                          89999999..6665....9***********************999999..9999986 PP
2B340.54.9e-1394174589
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                            +++++ ++g l+lpk+fa  +g+ ++ +  l+++de+ rsW+++l    +++ +   + W+ F+  n+L egD ++F+++ + +
  PGSC0003DMP400016867  94 IVRPNYISNGYLRLPKHFAIVNGLTNK-KCGLIVRDERQRSWNLRL--VAYDSCVRVYGEWSIFCVVNNLMEGDYMTFEVVAN-G 174
                           567889999**********99976643.4479**************..455444556677*******************8764.3 PP
3B353.25.5e-17216294587
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           +++++++++++l+lp +f++++g+  +   +++l de+ rsW+v l   +++ ++ +++GW +F +ang+++gD+  F+l+++
  PGSC0003DMP400016867 216 TIKPYTFTKALLYLPMDFVKSNGLMIR--SEMILIDEKQRSWSVWL--GRTGHQFGIKRGWTQFRNANGIQVGDTYKFELINN 294
                           5689******************88844..48***************..*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.789151IPR003340B3 DNA binding domain
SMARTSM010190.17151IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-13257IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-8250IPR003340B3 DNA binding domain
CDDcd100177.19E-13249No hitNo description
Gene3DG3DSA:2.40.330.101.3E-13260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-1585181IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-1687181IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.0E-1290185IPR003340B3 DNA binding domain
PROSITE profilePS5086310.44790184IPR003340B3 DNA binding domain
PfamPF023621.3E-1194176IPR003340B3 DNA binding domain
CDDcd100171.22E-1298169No hitNo description
Gene3DG3DSA:2.40.330.105.2E-20205299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-20208300IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-13211302No hitNo description
PROSITE profilePS5086312.985212305IPR003340B3 DNA binding domain
SMARTSM010192.1E-15213308IPR003340B3 DNA binding domain
PfamPF023629.8E-15216295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGKKWLVKVN GWRLEEGWEK FAEEHDLQLG DFLVFKHEGD MEFEVSIFDS SHCDREYTEY  60
LQEGGDNAEE TFKKVEFKEA ATHNSRGQSH FQCIVRPNYI SNGYLRLPKH FAIVNGLTNK  120
KCGLIVRDER QRSWNLRLVA YDSCVRVYGE WSIFCVVNNL MEGDYMTFEV VANGENPIWK  180
FHPITRLRHK KSDVTTPISQ TPASTSADAN PHFISTIKPY TFTKALLYLP MDFVKSNGLM  240
IRSEMILIDE KQRSWSVWLG RTGHQFGIKR GWTQFRNANG IQVGDTYKFE LINNGTIPIA  300
HVNILGVKDA NRQASQKPLT G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016867
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092831e-111AP009283.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence.
GenBankHG9755201e-111HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168739.10.0PREDICTED: B3 domain-containing protein REM14-like
TrEMBLM1AKH80.0M1AKH8_SOLTU; Uncharacterized protein
STRINGSolyc08g006230.2.11e-166(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-47B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]