PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400016628 | ||||||||
Common Name | LOC102593018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 312aa MW: 35162.7 Da PI: 6.8999 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.3 | 6.8e-35 | 23 | 128 | 3 | 104 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaessss 80 g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++ + ++++ ++ PGSC0003DMP400016628 23 GRKDRHSKVYTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpnqipssT-------NEADVVV 104 89*************************************************************988875444330.......3333333 PP TCP 81 sasnsssgkaaksaakskksqksa 104 +++++ + +++ +++++++ +s+ PGSC0003DMP400016628 105 LEQQPEYQLQRELEENNQSQVNSS 128 333333332222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-31 | 23 | 126 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.964 | 24 | 82 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MKRATGGGEI VQVEGGHILR SIGRKDRHSK VYTAKGPRDR RVRLAAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKNAID KLDELPPWNP NQIPSSTNEA DVVVLEQQPE YQLQRELEEN 120 NQSQVNSSNS YMMQGGGGGG GGGEAQQSLG DTMKSFFPMN SGTSLMNFQN YPHEIMPRSS 180 LQNEDLGLSL HTTFHRASTS SHHDDDHSTL FSNQNFEANY PRMASWNLLP QTFFTQNATA 240 FTQREPLQSN FSHLINHHAN WEERPLMNGL IHNQVEISNN SRHFTTDFQV PARIHGEHHE 300 HHSSASPNAH H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-23 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 8e-23 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400016628 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348845.1 | 0.0 | PREDICTED: transcription factor TCP4 | ||||
TrEMBL | M1AJX3 | 0.0 | M1AJX3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400024329 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6607 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-49 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400016628 |
Entrez Gene | 102593018 |
Publications ? help Back to Top | |||
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