PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016578
Common NameLOC102578433
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 273aa    MW: 30835.2 Da    PI: 9.5219
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016578genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.31.9e-33401801128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                           lp+G++F+P+d+e++ e+L++kv+ +       +   +    +++   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r++
  PGSC0003DMP400016578  40 LPAGVKFDPSDQEIL-EHLEAKVKLDAhklhplI---DefiqTLEGEnGICYTHPEKLP-GVTKDGLVRHFFHRPSKAYTTGTRKRRKV 123
                           799***********9.99****999884554332...122222333336**********.555566788******************74 PP

                   NAM  79 k......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           +      + +W++tgk+++v+  k++++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  PGSC0003DMP400016578 124 HtdiqgnETRWHKTGKTRPVVL-KNKVKGHKKILVLYtnYGKQRKPEKTNWVMHQYHL 180
                           4445455888************.8899**********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-3735199IPR003441NAC domain
PROSITE profilePS5100532.23640199IPR003441NAC domain
PfamPF023654.2E-1541180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MTCINIDSLT SVTKIIRTCP SCGHLIKYEE KAGIHNLPGL PAGVKFDPSD QEILEHLEAK  60
VKLDAHKLHP LIDEFIQTLE GENGICYTHP EKLPGVTKDG LVRHFFHRPS KAYTTGTRKR  120
RKVHTDIQGN ETRWHKTGKT RPVVLKNKVK GHKKILVLYT NYGKQRKPEK TNWVMHQYHL  180
GDDEDEKEGE LVVSKVFYQT QPRQCGGGNN NIKNNCPPLP QVRTSINGQV GSQFVQCFNP  240
TTLISFEHNN PTMTTTPRLP NFNNLPDASF IP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016578
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348970.10.0PREDICTED: NAC domain-containing protein 73
SwissprotO494591e-116NAC73_ARATH; NAC domain-containing protein 73
TrEMBLM1AJS50.0M1AJS5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000242700.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-111NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]