PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016535
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 354aa    MW: 38584 Da    PI: 4.8652
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016535genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.3e-16218254135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  PGSC0003DMP400016535 218 CHHCGVSEncTPAMRRGPDGPRTLCNACGLKWANKGT 254
                           **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.0E-680115IPR010399Tify domain
PROSITE profilePS5132012.36980115IPR010399Tify domain
PfamPF062005.2E-984114IPR010399Tify domain
PfamPF062039.8E-15145186IPR010402CCT domain
PROSITE profilePS5101712.689145187IPR010402CCT domain
SuperFamilySSF577163.47E-11211264No hitNo description
SMARTSM004012.1E-11212265IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-13217259IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.82E-15217260No hitNo description
PfamPF003209.5E-14218254IPR000679Zinc finger, GATA-type
PROSITE patternPS003440218245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAENPRPLQA RPYEDHAPLP SIRMVEEEEE EEDDDDGAYE DDGGEETMDE AEDVSMKVLN  60
HHQYGGQSQQ LYGGGGGVVE VSRTSELTLA FEGEVYVFPA VTPDKVQAVL LLLGGCDIPT  120
AVPTVELPFD NKVEDLPKQA NLSKRFASLV RFREKRKERC FDKKIRYSVR KEVAQRMHRK  180
NGQFASLKSS SGSSSCDSAK SSLEGYGTQH SVTVPGKCHH CGVSENCTPA MRRGPDGPRT  240
LCNACGLKWA NKGTLRDLSK AGRKTSVEPN ELVCFISKNE KYGTPDNPVK AFAEGSLDHC  300
ADLEKNLFSS GSNLENDIPV GIFSSSSNLV EQETLVGFGN ASKTEVVIPA NFD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016535
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-135HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074244.10.0GATA transcription factor 19-like isoform X2
SwissprotQ8GXL78e-64GAT24_ARATH; GATA transcription factor 24
TrEMBLM1AJN50.0M1AJN5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000242070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-60ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]