PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016414
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 273aa    MW: 30706.6 Da    PI: 9.1445
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016414genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.46.5e-331670155
               G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  PGSC0003DMP400016414 16 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 70
                          79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-321371IPR009057Homeodomain-like
PROSITE profilePS5129412.4551373IPR017930Myb domain
TIGRFAMsTIGR015571.8E-241671IPR006447Myb domain, plants
SuperFamilySSF466892.69E-161673IPR009057Homeodomain-like
PfamPF002497.9E-91869IPR001005SANT/Myb domain
PfamPF143794.3E-24116162IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGYGYENGVV MTRDPKPRLR WTADLHDRFV DAVTKLGGPD KATPKSVLRL MGLKGLTLYH  60
LKSHLQKYRL GQQTKKQNTA DQNRENIGES FGQFSLHSSG PSITSSSMDG MQGEAPISEA  120
LRRQIDVQKR LHEQLEVQQK LQMRIEAQGK YLQAILDKAQ KSLSTDMNSP SAVDETRAQL  180
TDFNIALSNL MDYMHGHNGD ETSAGKRTQD DTNKDLQRST YLTEGEQKKI MNIKLEETSV  240
RFDLNSRSSY DFIGMNSAVL EAKQFSNGRL EM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-181669154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-181669154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-181669154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-181669154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016414
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3031710.0AY303171.1 Solanum bulbocastanum chromosome 8 clone UW177O13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352940.10.0PREDICTED: myb family transcription factor APL isoform X2
SwissprotC0SVS48e-85PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLM1AJD60.0M1AJD6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000240500.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.19e-84G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]