PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400016414 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 273aa MW: 30706.6 Da PI: 9.1445 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.4 | 6.5e-33 | 16 | 70 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl PGSC0003DMP400016414 16 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 70 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-32 | 13 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.455 | 13 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.8E-24 | 16 | 71 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 2.69E-16 | 16 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.9E-9 | 18 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.3E-24 | 116 | 162 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGYGYENGVV MTRDPKPRLR WTADLHDRFV DAVTKLGGPD KATPKSVLRL MGLKGLTLYH 60 LKSHLQKYRL GQQTKKQNTA DQNRENIGES FGQFSLHSSG PSITSSSMDG MQGEAPISEA 120 LRRQIDVQKR LHEQLEVQQK LQMRIEAQGK YLQAILDKAQ KSLSTDMNSP SAVDETRAQL 180 TDFNIALSNL MDYMHGHNGD ETSAGKRTQD DTNKDLQRST YLTEGEQKKI MNIKLEETSV 240 RFDLNSRSSY DFIGMNSAVL EAKQFSNGRL EM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-18 | 16 | 69 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 16 | 69 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 16 | 69 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 16 | 69 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400016414 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY303171 | 0.0 | AY303171.1 Solanum bulbocastanum chromosome 8 clone UW177O13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352940.1 | 0.0 | PREDICTED: myb family transcription factor APL isoform X2 | ||||
Swissprot | C0SVS4 | 8e-85 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | M1AJD6 | 0.0 | M1AJD6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400024050 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 9e-84 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400016414 |
Publications ? help Back to Top | |||
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