PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400016413

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 144aa MW: 16143.4 Da PI: 10.2802

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400016413	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.1	1.9e-33	16	70	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl PGSC0003DMP400016413 16 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 70 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-32	13	71	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.455	13	73	IPR017930	Myb domain
SuperFamily	SSF46689	7.53E-17	16	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.1E-25	16	71	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-9	18	69	IPR001005	SANT/Myb domain
Pfam	PF14379	8.8E-10	116	138	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MGYGYENGVV MTRDPKPRLR WTADLHDRFV DAVTKLGGPD KATPKSVLRL MGLKGLTLYH 60 LKSHLQKYRL GQQTKKQNTA DQNRENIGES FGQFSLHSSG PSITSSSMDG MQGEAPISEA 120 LRRQIDVQKR LHEQLEVHIK PFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	16	72	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	16	72	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-21	16	72	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-21	16	72	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-21	16	72	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-21	16	72	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	16	72	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	16	72	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	16	72	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	16	72	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	16	72	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	16	72	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400016413

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009262	2e-60	AP009262.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0006A17, complete sequence.
GenBank	HG975447	2e-60	HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBank	HG975520	2e-60	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352940.1	3e-98	PREDICTED: myb family transcription factor APL isoform X2
Swissprot	C0SVS4	1e-59	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	M1AJD5	1e-102	M1AJD5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400024050	1e-87	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-58	G2-like family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400016413

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]