PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400016412 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 274aa MW: 30777.6 Da PI: 9.1445 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.4 | 6.5e-33 | 16 | 70 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl PGSC0003DMP400016412 16 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 70 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-32 | 13 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.455 | 13 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.87E-16 | 16 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-24 | 16 | 71 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.0E-9 | 18 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.4E-24 | 117 | 163 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MGYGYENGVV MTRDPKPRLR WTADLHDRFV DAVTKLGGPD KATPKSVLRL MGLKGLTLYH 60 LKSHLQKYRL GQQTKKQNTA DQNRENIAGE SFGQFSLHSS GPSITSSSMD GMQGEAPISE 120 ALRRQIDVQK RLHEQLEVQQ KLQMRIEAQG KYLQAILDKA QKSLSTDMNS PSAVDETRAQ 180 LTDFNIALSN LMDYMHGHNG DETSAGKRTQ DDTNKDLQRS TYLTEGEQKK IMNIKLEETS 240 VRFDLNSRSS YDFIGMNSAV LEAKQFSNGR LEM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-18 | 16 | 69 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 16 | 69 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 16 | 69 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 16 | 69 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400016412 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY303171 | 0.0 | AY303171.1 Solanum bulbocastanum chromosome 8 clone UW177O13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352939.1 | 0.0 | PREDICTED: myb family transcription factor APL isoform X1 | ||||
Swissprot | C0SVS4 | 9e-84 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | M1AJD4 | 0.0 | M1AJD4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400024050 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4416 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 1e-82 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400016412 |
Publications ? help Back to Top | |||
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