PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400016357
Common NameLOC102602611
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 390aa    MW: 41394.6 Da    PI: 8.5596
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400016357genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.84.5e-39912244123
                   TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                            k++++++hTkv+gR+RR+R++a+caar+F+L++eLG ++d++tieWLlqqa+pai++ tgt++++a+++  ++s +ss+ + s++   
  PGSC0003DMP400016357  91 VKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGNKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNVSTRSSGTTISAPpsk 179
                           5899***************************************************************9998777777777766666444 PP

                   TCP  89 .........kaaksaakskksqksaasalnlakesr.akararar 123
                                    +aa+++a   + ++ ++++  ++++   + +++r r
  PGSC0003DMP400016357 180 saplfihgaSAAAATAMLGFHHHLSTNNTGFSQDPDeNYMKKRFR 224
                           445555554333333355555555555555555332133333334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.20495149IPR017887Transcription factor TCP subgroup
PfamPF036344.8E-3695220IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEFMEPHRKK QGGSTSATNH HQHHQHNQEA PSSLQLISPH QSQPDPSTPG SNHPHGPFMG  60
SISMQSTTLI SPPSTNSPTP NNNALSTPKV VKKPSKDRHT KVDGRGRRIR MPALCAARVF  120
QLTKELGNKS DGETIEWLLQ QAEPAIIATT GTGTIPANFS TLNVSTRSSG TTISAPPSKS  180
APLFIHGASA AAATAMLGFH HHLSTNNTGF SQDPDENYMK KRFREDTTTS GATSPSADKP  240
GSDSSKPGSS QPPSLIPAQA MWAVAPAGGN VGNGFWMLPV SGGTGSTTVS VGAAQSDHQL  300
WQYKSSTIGG LEFPGGGRFS PVQLGSMVLQ QSQPVQQLGS NMGMLSSMNA YNNNNSRVDL  360
GMNLEHHHHQ RQQHQDSDSG DENHNDSQS*
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400016357
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350337.10.0PREDICTED: transcription factor TCP23-like
SwissprotQ9C5183e-67TCP8_ARATH; Transcription factor TCP8
TrEMBLM1AJ910.0M1AJ91_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000239810.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.12e-43TCP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]