PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400016317 | ||||||||
Common Name | LOC102585728 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 292aa MW: 33621.1 Da PI: 7.4909 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.2 | 1.1e-51 | 7 | 130 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 p+GfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++PwdLp + +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk PGSC0003DMP400016317 7 PAGFRFHPTDEELVMHYLCRKCASQPIAV-PIIAEIDLYKYNPWDLPDLALYGEKEWYFFSPRDRKYPNGSRPNRAAGNGYWKATGADK 94 89*************************99.88***************65556799********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + + +g+kk Lvfy g+apkgekt+W+mheyrl PGSC0003DMP400016317 95 PIGR--PKSMGIKKALVFYAGKAPKGEKTNWIMHEYRL 130 **98..6789**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-61 | 3 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.081 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-27 | 7 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MVELQFPAGF RFHPTDEELV MHYLCRKCAS QPIAVPIIAE IDLYKYNPWD LPDLALYGEK 60 EWYFFSPRDR KYPNGSRPNR AAGNGYWKAT GADKPIGRPK SMGIKKALVF YAGKAPKGEK 120 TNWIMHEYRL AHVDRSARNK NNSLRLDDWV LCRIYNKKGT TEKNQLNIRK MNVEMSPAVS 180 EGDVKPEIMP YSVSTKPSST SYHVYNDFTY FDSSDSLPKL HTDSSCSEHV PSPEFTCEKE 240 VQSEPKVKLN EWEKTALDFP FNYTDATTSE LQSCYEMSPL QDIFMYLQKP F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-82 | 2 | 163 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400016317 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC453999 | 0.0 | KC453999.1 Solanum lycopersicum cultivar Ailsa Craig NAC4 domain protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351144.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-135 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | M1AJ57 | 0.0 | M1AJ57_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400023917 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-138 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400016317 |
Entrez Gene | 102585728 |