PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400016315 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 191aa MW: 21959.8 Da PI: 6.6704 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38.9 | 2.6e-12 | 2 | 29 | 101 | 128 |
NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+apkgekt+W+mheyrl PGSC0003DMP400016315 2 GIKKALVFYAGKAPKGEKTNWIMHEYRL 29 99************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.125 | 1 | 56 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-16 | 1 | 56 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-5 | 2 | 29 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MGIKKALVFY AGKAPKGEKT NWIMHEYRLA HVDRSARNKN NSLRLDDWVL CRIYNKKGTT 60 EKNQLNIRKM NVEMSPAVSE GDVKPEIMPY SVSTKPSSTS YHVYNDFTYF DSSDSLPKLH 120 TDSSCSEHVP SPEFTCEKEV QSEPKVKLNE WEKTALDFPF NYTDATTSEL QSCYEMSPLQ 180 DIFMYLQKPF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-21 | 1 | 62 | 114 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-21 | 1 | 62 | 114 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-21 | 1 | 62 | 114 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-21 | 1 | 62 | 114 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-21 | 1 | 62 | 117 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-21 | 1 | 62 | 117 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-21 | 1 | 62 | 117 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-21 | 1 | 62 | 117 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-21 | 1 | 62 | 117 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-21 | 1 | 62 | 117 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-21 | 1 | 62 | 117 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-21 | 1 | 62 | 117 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-21 | 1 | 62 | 114 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-21 | 1 | 62 | 114 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400016315 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC453999 | 0.0 | KC453999.1 Solanum lycopersicum cultivar Ailsa Craig NAC4 domain protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351144.1 | 1e-140 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 3e-63 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | M1AJ55 | 1e-141 | M1AJ55_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400023917 | 1e-139 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-65 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400016315 |