PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400016171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 215aa MW: 23229.7 Da PI: 6.3449 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.9 | 3.3e-15 | 2 | 51 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PGSC0003DMP400016171 2 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 51 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.1E-34 | 1 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 1 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.90E-27 | 2 | 61 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.6E-19 | 2 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-5 | 2 | 13 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.2E-10 | 2 | 51 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-18 | 2 | 61 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-5 | 41 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GTSAVTNFDI 60 SRYDVKRICS SSTLIAGDLA KRSSSKDSVV CPSSYEDYSS CTTSPRPILA ITNGEQLQQP 120 VDSFMDMVPL MGAAGSSSRS SSNAPSPKCP GSGEMSCDFG VGLEYPQAYY SSVQVQDHKF 180 EDGSKGNDDN SSSSGRIGNM DLVHPVPMFA LWNQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400016171 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006342914.1 | 1e-156 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | M1AIV0 | 1e-159 | M1AIV0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400023709 | 1e-160 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8777 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-41 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400016171 |
Publications ? help Back to Top | |||
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